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BioLiP
>protein
TFNDIEARLAAVLEEAFEAGTSIYNERGFKRRIGYGNRPAVIHIDLANAWTQPGHPFSCPGMETIIPNVQRINEAARAKG
VPVFYTTNVYRNRDASSGTNDMGLWYSKIPTETLPADSYWAQIDDRIAPADGEVVIEKNRASAFPGTNLELFLTSNRIDT
LIVTGATAAGCVRHTVEDAIAKGFRPIIPRETIGDRVPGVVQWNLYDIDNKFGDVESTDSVVQYLDALPQFEDTVPKTLS
DPQPEVEAPADPV

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1nba:A 253 253 1.0000 1.0000 1.0000 0.0 1nba:B, 1nba:C, 1nba:D
2 3eef:A 173 160 0.1858 0.2717 0.2938 9.61e-18 3eef:B
3 8bkd:F 224 209 0.2055 0.2321 0.2488 6.33e-11 8bkd:C, 8bkd:D, 8bkd:G, 8bkd:H, 8bkd:J, 8bkd:K, 8bkd:L
4 2fq1:A 279 141 0.1581 0.1434 0.2837 6.98e-10
5 6a8l:A 183 78 0.1186 0.1639 0.3846 1.73e-09 6a8l:B, 5zn8:A, 5zn8:B
6 3tb4:A 205 155 0.1660 0.2049 0.2710 1.06e-07 3tg2:A
7 6azq:G 226 139 0.1502 0.1681 0.2734 3.83e-07 6azq:H, 6azq:A, 6azq:B, 6azq:C, 6azq:D, 6azq:E, 6azs:B, 6azs:D
8 6xje:B 220 176 0.1739 0.2000 0.2500 1.55e-06 6xj4:B, 6xje:A, 6xje:C, 6xje:D
9 3o93:A 190 169 0.1542 0.2053 0.2308 1.99e-06 3o90:A, 3o90:B, 3o90:C, 3o90:D, 3o91:A, 3o91:B, 3o91:C, 3o91:D, 3o92:A, 3o92:B, 3o92:C, 3o92:D, 3o93:B, 3o93:C, 3o93:D, 3o94:A, 3o94:B, 3o94:C, 3o94:D
10 3s2s:A 182 78 0.0949 0.1319 0.3077 2.23e-06 3s2s:B, 3s2s:C, 3s2s:D
11 6xjm:D 230 136 0.1581 0.1739 0.2941 5.64e-05 6xjm:A, 6xjm:B, 6xjm:C
12 1im5:A 179 154 0.1344 0.1899 0.2208 1.89e-04
13 3r77:B 206 133 0.1423 0.1748 0.2707 2.52e-04 3r77:A
14 8cib:D 196 127 0.1462 0.1888 0.2913 7.68e-04 8cib:F
15 6kua:A 163 78 0.0870 0.1350 0.2821 0.002
16 5hwg:A 175 148 0.1621 0.2343 0.2770 0.002 5hwh:A
17 2wta:A 212 176 0.1739 0.2075 0.2500 0.16 2wt9:A, 2wt9:B
18 1nf8:A 207 159 0.1344 0.1643 0.2138 0.47
19 5xgd:A 548 103 0.0830 0.0383 0.2039 0.52 8pps:A, 8pps:B, 5xge:A
20 6iuy:A 585 70 0.0672 0.0291 0.2429 2.0 6iuy:B
21 4ifd:J 948 81 0.1028 0.0274 0.3210 2.6 5c0x:J, 5jea:J, 2vnu:D
22 3pl1:A 185 39 0.0593 0.0811 0.3846 6.9
23 5wou:A 95 44 0.0514 0.1368 0.2955 7.4
24 4bfn:A 106 80 0.0711 0.1698 0.2250 7.5 4bfo:A, 2v8l:A, 2v8m:A, 2v8m:B, 2v8m:C, 2v8m:D
25 7k0a:A 196 56 0.0751 0.0969 0.3393 9.2 7k09:A, 7k09:B, 7k09:C, 7k09:D, 7k09:E, 7k09:F, 7k0a:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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