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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TFIRGPICGTDNCPSRLWRIIDGRRTCQYGHVMKLIGHEAKLLFLKSFQFILKRQIRWLITEMRFPKEFEHVAKIIWLKI
LKTINDQPQEELKLQLHMTSTISILYLASTHLSLPVYTCDYIKWICTAKMPYFQASEILQLYNKIALTCGMIHFKEFFNS
EISCQGLLLKLVMQCALPPEFYFYTKQVIEFEETDIRNLTLWERTDERHTGRVSNHAELRVLSYFMLTINWMLSFDRDRQ
YPLKWILSLTESLTQRTTTSESIGRNIVKVVYPDKPTSSDYFQWSEEETLEFLKWMEKQFLPTQTDQKIARRKLYKIFPL
DSTHQLTFIEDLQERYAKQTPFFPPARKEAIGRLLTHIASQLLVDFAISKEQLKDCISRIKNACLHRMN

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5n61:Q 389 389 1.0000 1.0000 1.0000 0.0
2 6rqh:Q 442 444 0.9949 0.8756 0.8716 0.0 6ruo:Q
3 5w65:P 481 388 0.9100 0.7360 0.9124 0.0 5n5y:Q, 5n5z:Q, 5n60:Q, 6rql:Q, 6rrd:Q, 6rui:Q, 6rwe:Q, 6tps:Q, 5w5y:P, 5w64:P, 5w66:P
4 5oa1:U 291 289 0.5167 0.6907 0.6955 1.15e-127
5 5oa1:U 291 84 0.2057 0.2749 0.9524 4.31e-46
6 4r4e:B 84 53 0.0463 0.2143 0.3396 1.1
7 5ky2:A 355 63 0.0488 0.0535 0.3016 1.4 5kxh:A, 5ky0:A, 5ky3:A, 5ky4:A, 5ky5:A, 5ky7:A, 5ky8:A, 5ky9:A, 5uxh:A, 5uxh:B
8 6ob0:A 442 84 0.0488 0.0430 0.2262 2.0 6e7k:A, 6e7k:B, 6ob0:B, 6ob0:C, 6ob0:D
9 6oau:A 422 84 0.0488 0.0450 0.2262 2.1 6oau:B, 6oaz:A, 6oaz:B, 6oaz:C, 6oaz:D
10 7pnv:b 323 94 0.0694 0.0836 0.2872 3.6
11 4zt9:C 1160 57 0.0463 0.0155 0.3158 4.6
12 6oiu:C 900 60 0.0514 0.0222 0.3333 5.1 6oiu:A, 6oiu:B, 6oiu:D
13 7ql6:C 427 56 0.0437 0.0398 0.3036 5.7 8esk:B, 8f2s:B, 8f6y:B, 8f6z:B, 7ql5:C, 7smq:B, 7sms:B
14 1gsl:A 243 173 0.1054 0.1687 0.2370 6.5 1lec:A, 1led:A
15 5f3m:A 120 55 0.0514 0.1667 0.3636 6.7 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E
16 6f2s:H 218 93 0.0566 0.1009 0.2366 8.4 6f2s:A, 6f2s:B, 6f2s:C, 6f2s:F, 6f2s:E, 6f2s:D, 6f2s:G, 6f2s:K, 6f2s:J, 6f2s:I

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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