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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TFIRGPICGTDNCPSRLWRIIDGRRTCQYGHVMEGDVEFNDDEDGAGVITRRLNLTTNATGSFQSSQLTNSQLLQQQQRQ
SHKKFKKLIGHEAKLLFLKSFQFILKRQIRWLITEMRFPKEFEHVAKIIWLKILKTINDQPQEELKLQLHMTSTISILYL
ASTHLSLPVYTCDYIKWICTAKMPYFQASEILPKSWRIQLPNYYVSILEGSISPFNGQLYNKIALTCGMIHFKEFFNSEI
SCQGLLLKLVMQCALPPEFYFYTKQVIEFEETDIRNLTLWERTDERHTGRVSNHAELRVLSYFMLTINWMLSFDRDRQYP
LKWILSLTESLTQRTTTSESIGRNIVKVVYPDKPTSSDYFQWSEEETLEFLKWMEKQFLPTDQKIARRKLYKIFPLDREA
NHDGEFNDSTHQLTFIEDLQERYAKQTPFFPPARKEAIGRLLTHIASQLLVDFAISKEQLKDCISRIKNACLHRMN

The query sequence (length=476) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5w65:P 481 487 0.9790 0.9688 0.9569 0.0 5n5y:Q, 5n5z:Q, 5n60:Q, 6rql:Q, 6rrd:Q, 6rui:Q, 6rwe:Q, 6tps:Q, 5w5y:P, 5w64:P, 5w66:P
2 6rqh:Q 442 476 0.9286 1.0000 0.9286 0.0 6ruo:Q
3 5n61:Q 389 478 0.8130 0.9949 0.8096 0.0
4 5oa1:U 291 359 0.4412 0.7216 0.5850 2.06e-121
5 5oa1:U 291 106 0.1744 0.2852 0.7830 1.13e-43
6 6oau:A 422 76 0.0357 0.0403 0.2237 5.1 6oau:B, 6oaz:A, 6oaz:B, 6oaz:C, 6oaz:D
7 2f6d:A 492 67 0.0357 0.0346 0.2537 5.3
8 6oiu:C 900 60 0.0420 0.0222 0.3333 5.4 6oiu:A, 6oiu:B, 6oiu:D
9 6ob0:A 442 76 0.0357 0.0385 0.2237 5.5 6e7k:A, 6e7k:B, 6ob0:B, 6ob0:C, 6ob0:D
10 5f3m:A 120 55 0.0420 0.1667 0.3636 8.0 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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