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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TFGRATHVVVRALPESLAQQALRRTKGDEVDFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVCEETA
LITRPGAPSRRKEADMMKEALEKLQLNIVEMKDENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVSTVPV
VDALHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDTAANCIYLNIPSKGHVLLHRTPEEYPESAKV
YEKLKDHMLIPVSNSELEKVDGLLTCSSVLINK

The query sequence (length=273) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jaj:B 281 272 0.9341 0.9075 0.9375 0.0 2c6z:A, 2ci6:A, 2ci7:A, 6dge:A, 3i4a:A, 3i4a:B, 2jai:A, 2jaj:A, 3p8e:A, 3p8e:B, 3p8p:A, 3p8p:B, 6szp:A, 7ulu:A, 7ulu:B, 7ulv:A, 7ulv:B, 7ulv:C, 7ulv:D, 7ulv:E, 7ulv:F, 7ulx:A, 7ulx:B
2 1h70:A 255 268 0.2894 0.3098 0.2948 6.85e-30 3bpb:A, 3bpb:B, 3rhy:A, 3rhy:B
3 6k32:A 1208 35 0.0549 0.0124 0.4286 0.41 3jb7:A, 6ty9:A, 6tz1:A, 6tz2:A
4 3jb6:A 1196 35 0.0549 0.0125 0.4286 0.43 5h0r:F, 6ty8:A
5 4iuw:A 630 129 0.1209 0.0524 0.2558 3.7
6 8b23:A 702 48 0.0549 0.0214 0.3125 5.1 4av3:A, 5lzr:B
7 5lzq:A 725 48 0.0549 0.0207 0.3125 5.7 4av3:B, 8b22:A, 8b24:A, 8b24:B, 5lzq:B, 6qxa:A, 6qxa:B, 6qxa:C, 6qxa:D
8 3ob8:A 1024 19 0.0403 0.0107 0.5789 6.4 3ob8:B, 3ob8:D, 3ob8:C, 3oba:A, 3oba:C, 3oba:D, 3oba:B
9 2b0t:A 735 64 0.0623 0.0231 0.2656 7.2 3mbc:A, 3mbc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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