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BioLiP
>protein
TFAKIKFSAQIRLETGLHIGGSDAFAAIGAINSPVIKDPITNLPIIPGSSLKGKMRTLLAKVYNESDILSRLFGNSKDKR
FKMGRLIFRDAFLSNADELDSLGVRSYTEVKFENTIDRITAEANPRQIERAIRNSTFDFELIYEITDENENQVEEDFKVI
RDGLKLLELDYLGGSGSRGYGKVAFENLKATTVFGNYDVKTLNELLT

The query sequence (length=207) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6ifn:F 220 216 0.9952 0.9364 0.9537 1.84e-146 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
2 9ash:H 214 214 0.5556 0.5374 0.5374 1.38e-68 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
3 8x5d:K 235 228 0.5169 0.4553 0.4693 5.37e-66 8wfx:I, 8wfx:J, 8wfx:K, 8wfx:L, 8wfx:G, 8wfx:H, 8x5d:L, 8x5d:J, 8x5d:I, 8x5d:H
4 8do6:E 205 204 0.4976 0.5024 0.5049 1.12e-52 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
5 6mur:D 287 257 0.4300 0.3101 0.3463 2.71e-38 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
6 7uzw:E 184 211 0.4106 0.4620 0.4028 5.78e-30 7uzx:E
7 4qts:C 186 222 0.3430 0.3817 0.3198 3.79e-21 4qts:D
8 4n0l:A 335 251 0.3237 0.2000 0.2669 3.79e-18 4n0l:B
9 8x5d:G 77 85 0.1643 0.4416 0.4000 2.87e-10
10 8yhd:B 199 179 0.2609 0.2714 0.3017 1.05e-05 8yhd:C, 8yhd:D, 8yhd:E, 8yhd:F, 8yhd:J, 8yhd:O, 8yhe:B, 8yhe:C, 8yhe:D, 8yhe:E, 8yhe:F, 8yhe:J, 8z4j:C, 8z4j:D, 8z4j:E, 8z4j:F, 8z4j:J, 8z4l:B, 8z4l:C, 8z4l:D, 8z4l:E, 8z4l:F, 8z4l:J, 8z99:B, 8z99:C, 8z99:D, 8z99:E, 8z99:F, 8z99:J, 8z99:P, 8z9c:B, 8z9c:C, 8z9c:D, 8z9c:E, 8z9c:F, 8z9c:J, 8z9e:C, 8z9e:D, 8z9e:E, 8z9e:F, 8z9e:J
11 8z9e:B 170 163 0.2271 0.2765 0.2883 0.002 8yhd:A, 8z4j:B, 8z4l:A, 8z99:A, 8z9c:A
12 8bmw:F 239 55 0.1014 0.0879 0.3818 0.003 8bmw:G
13 6s6b:I 284 144 0.1836 0.1338 0.2639 0.006 6s8b:I, 6s8e:I, 6s91:I, 6sh8:I, 6shb:I, 6sic:I
14 8s9u:D 518 202 0.2464 0.0985 0.2525 0.007 8s9t:D, 8s9v:D, 8s9x:D
15 8bmw:N 251 163 0.2029 0.1673 0.2577 0.029
16 6ifr:H 353 47 0.1063 0.0623 0.4681 0.081 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
17 5jpi:A 496 96 0.1208 0.0504 0.2604 0.24 5hm8:A, 5hm8:B, 5hm8:C, 5hm8:D, 5hm8:E, 5hm8:F, 5hm8:G, 5hm8:H, 5jpi:B, 5jpi:C, 5jpi:D, 5jxw:A, 5jxw:B, 5jxw:C, 5jxw:D, 5t8k:A, 5t8k:C, 5t8k:B, 5t8k:D, 5tj9:A, 5tj9:B, 5tj9:C, 5tj9:D, 5tls:A, 5tls:B, 5tls:C, 5tls:D, 5utu:A, 5utu:B, 5utu:C, 5utu:D, 5utu:E, 5utu:F, 5utu:G, 5utu:H
18 6muu:F 323 84 0.1304 0.0836 0.3214 0.53
19 3x1l:D 331 43 0.0725 0.0453 0.3488 0.75 3x1l:C, 3x1l:E
20 8bmw:H 275 38 0.0773 0.0582 0.4211 0.91 8bmw:I
21 6mur:F 377 25 0.0725 0.0398 0.6000 1.3 6iqw:F, 6mus:F, 6mut:F
22 9ash:J 311 72 0.1014 0.0675 0.2917 1.5 9asi:J, 6xn3:J, 6xn4:J, 6xn5:J, 6xn7:J
23 8kaq:D 364 46 0.0773 0.0440 0.3478 3.3
24 3klj:A 378 44 0.0725 0.0397 0.3409 5.1
25 8x5d:N 370 23 0.0531 0.0297 0.4783 5.1
26 5kwk:B 457 70 0.0918 0.0416 0.2714 5.6 5koe:A, 5kor:B, 5kor:C, 5kor:A, 5kor:D, 5kwk:A, 5kx6:A, 5kx6:B
27 8do6:H 327 30 0.0628 0.0398 0.4333 7.0 7uzz:E, 7v00:E, 7v01:E, 7v02:E
28 9bf5:C 1190 174 0.1884 0.0328 0.2241 7.1 9bf5:D, 9c6q:C
29 7bxo:E 125 31 0.0676 0.1120 0.4516 7.1 7aer:A, 7bxo:A, 6m6v:A
30 6o7e:Y 361 24 0.0676 0.0388 0.5833 7.8 6o7h:F, 6o7i:F
31 4ls8:A 416 67 0.0918 0.0457 0.2836 9.5 4ls7:A, 4ls7:B, 4ls8:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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