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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TERIRNVALRSKVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELA
KANGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNSQTFLNLA
EKVIIEVNEWQNPMLEGIHDIWDGNVSGVPTRDIVPIVRADQRVGGPVLRVNPDKIAAIVRTNDRDRNAPFAAPDETAKA
IAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEGPFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSP
EAAEEINNRMDFFRSKIILRQQDVSASPGIIRRLGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSGDFARSSYLSIF
LSPSTAKGGKISAIVPMAAHVDHIMQDAQIFVTEQGLADLRGLSPVQRAREIISKCAHPDYRPMLQDYFDRALKNSFGKH
TPHLLTEALSWHQRFIDTGTMLPSSLEHHHHH

The query sequence (length=512) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4eu5:A 513 512 0.9980 0.9961 0.9980 0.0 5ddk:A, 5ddk:B, 5dw4:B, 5dw4:A, 5dw5:A, 5dw5:B, 5dw6:A, 5dw6:B, 5e5h:A, 5e5h:B, 4eu3:B, 4eu4:A, 4eu4:B, 4eu5:B, 4eu6:A, 4eu6:B, 4eu7:A, 4eu7:B, 4eu8:A, 4eu8:B, 4eu9:A, 4eu9:B, 4eua:A, 4eua:B, 4eub:A, 4eub:B, 4euc:A, 4euc:B, 4eud:A, 4eud:B
2 2nvv:A 496 487 0.4355 0.4496 0.4579 1.29e-147 2nvv:B, 2nvv:C, 2nvv:D, 2nvv:E
3 3qdq:A 447 232 0.1387 0.1588 0.3060 2.69e-17
4 2oas:A 427 227 0.1289 0.1546 0.2907 5.52e-15 2oas:B
5 4n8i:A 440 306 0.1660 0.1932 0.2778 5.35e-14 4n8i:B, 4n8j:C, 4n8j:D
6 3bur:A 325 105 0.0488 0.0769 0.2381 0.11 3bur:B, 3buv:B, 3buv:A, 3bv7:A, 3bv7:B, 3caq:A, 3caq:B, 3cas:A, 3cas:B, 3cav:A, 3cav:B, 3cmf:A, 3cmf:B, 3cot:A, 3cot:B, 3dop:A, 3dop:B, 3g1r:A, 3g1r:B, 3uzw:A, 3uzw:B, 3uzx:A, 3uzx:B, 3uzy:A, 3uzy:B, 3uzz:A, 3uzz:B
7 7jqh:A 313 102 0.0625 0.1022 0.3137 0.14 7jqi:A, 7jqj:A, 6ovl:A, 6oxn:A, 6p35:A
8 7vmd:A 266 57 0.0410 0.0789 0.3684 1.3 7vme:A
9 7vpb:A 270 111 0.0605 0.1148 0.2793 2.6 7vpb:B
10 8ckb:A050 333 67 0.0352 0.0541 0.2687 2.8 8ckb:A250, 8ckb:A286, 8ckb:A467
11 2p88:A 369 22 0.0254 0.0352 0.5909 3.8 2p88:B, 2p88:C, 2p88:D, 2p88:E, 2p88:F, 2p88:G, 2p88:H, 2p8b:A, 2p8c:A
12 6du7:A 448 41 0.0273 0.0312 0.3415 4.0 6du7:B, 6du7:C, 6du7:D, 6du7:E, 6du7:F, 6du7:G, 6du7:H
13 6n8l:W 133 74 0.0371 0.1429 0.2568 6.5
14 1qzw:A 432 57 0.0352 0.0417 0.3158 6.6 3kl4:A, 5l3s:A, 5l3s:C, 5l3s:E, 5l3s:G, 5l3v:A, 5l3v:B, 1qzw:C, 1qzw:E, 1qzw:G, 3zn8:M
15 3om9:A 329 23 0.0254 0.0395 0.5652 6.6 3om9:B, 3om9:C, 3om9:D, 1pzf:A, 1pzf:B, 1pzf:C, 1pzf:D, 1pzg:A, 1pzg:B, 1pzg:C, 1pzg:D, 1pzh:A, 1pzh:B, 1pzh:C, 1pzh:D
16 5wyj:CB 1098 93 0.0391 0.0182 0.2151 7.1 7ajt:UV, 7aju:UV, 7d4i:RE, 7d5s:RE, 7d5t:RE, 7d63:RE, 6ke6:RE, 6lqp:RE, 6lqq:RE, 6lqr:RE, 6lqs:RE, 6lqt:RE, 6lqu:RE, 7suk:NH, 5wyk:CB, 6zqb:UV, 6zqc:UV, 6zqd:UV, 6zqe:UV
17 8wch:A 396 49 0.0371 0.0480 0.3878 9.1 8wch:B
18 6xb3:A 234 94 0.0469 0.1026 0.2553 9.4 6xb3:B, 6xb3:C, 6xb3:D, 6xb3:E, 6xb3:F, 6xb3:G, 6xb3:H, 6xb3:I, 6xb3:J, 6xb3:K, 6xb3:L, 6xb3:M, 6xb3:N, 6xb3:O, 6xb3:P
19 4i4i:A 319 106 0.0527 0.0846 0.2547 9.5 4i4i:B, 4i4i:C, 4i4i:D, 4i7e:A, 4i7e:B, 4i7e:C, 4i7e:D, 1mto:A, 1mto:B, 1mto:C, 1mto:D, 1mto:E, 1mto:F, 1mto:G, 1mto:H, 3pfk:A, 4pfk:A, 6pfk:A, 6pfk:B, 6pfk:C, 6pfk:D
20 7f6w:A 506 26 0.0215 0.0217 0.4231 9.6
21 6bz0:A 469 104 0.0586 0.0640 0.2885 9.9 6bz0:B, 6bz0:C, 6bz0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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