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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TEQYAKDTGKNCSYCHQVPASHKSQPGQQGRDQMDCMACHKAFMPLTSTAQIPLTERGVLFMQNGKKLAVDLNYDPLTEA
NVVKEFARVSGLSESAFGKVSGNITKQRLAYFLMVALKAQGEVAKVTANDLKKYADYTKAASANQKALVWAVKKGYLSAR
KAGSKLYLDPTAAASRTEVVKAFNAVQAKYPRVLPAPTAYAGTKKCQSCHGFSKFSATWHPNMVKTPDFFGSMLLWSLND
KFQASDVRYVINSPTELLFVGKDYKYMPYAFDKAENQWVADSHTQNWLVSCAKCHVTGYPGPNGITGTPYSVVGNTYKEL
FTEPGIGCEACHGPGALHAATGDPTKILGEKDGIAASATCEKCHEGAHHRGGEYNDEYAIAGVSGTVYGKHGISLQTIQK
NSHGSVSCLECHSQDYRTALEDYLKANPGKTAADFNATVKLSDFKLGITCVTCHSPHSEKGYGKQLRKEPNELCMECHTG
EGFTATSGSKGVHHPQKEVFTGQLGASFTALGIPEKVYNPMGSAECVTCHMPNGYHYFKVGKPTISIDNLTIKNDSSLGS
YQSRYKASYNSCSVCHDAVGFDANAVKAWTDKVDTRVNNILNQLKTTYAAAYNDPNYKYADTLAGIVAADASHGIHNTAL
TELLLDKAEYYLTQIPKQ

The query sequence (length=658) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6qvm:A 658 658 1.0000 1.0000 1.0000 0.0
2 6i5b:A 484 530 0.2371 0.3223 0.2943 1.12e-39 6i5b:B
3 6r2q:A 265 199 0.0729 0.1811 0.2412 0.003
4 1bvb:A 211 56 0.0319 0.0995 0.3750 0.16 1ft5:A, 1ft6:A
5 4rkm:B 660 204 0.0638 0.0636 0.2059 0.29 4rkm:A, 4rkm:I, 4rkm:C, 4rkm:D, 4rkm:K, 4rkm:E, 4rkm:F, 4rkm:H, 4rkm:L, 4rkm:J, 4rkm:G, 4rkn:A, 4rkn:C, 4rkn:B, 4rkn:D
6 6h62:A 370 107 0.0456 0.0811 0.2804 0.68 6h62:B
7 2ozy:A 142 112 0.0380 0.1761 0.2232 1.2 2p0b:A
8 4lmh:D 695 152 0.0562 0.0532 0.2434 1.4 4lmh:A, 4lmh:B, 4lmh:C
9 4lmh:D 695 158 0.0486 0.0460 0.2025 10.0 4lmh:A, 4lmh:B, 4lmh:C
10 1qdb:A 473 60 0.0258 0.0359 0.2833 1.4 1qdb:B, 1qdb:C
11 1l9m:B 681 57 0.0274 0.0264 0.3158 1.6 1l9m:A, 1l9n:A, 1l9n:B, 1nud:A, 1nud:B, 1nuf:A, 1nug:A, 1nug:B, 8oxv:A, 8oxw:A, 8oxx:A
12 3sxq:A 519 55 0.0274 0.0347 0.3273 2.1 3sxq:B, 3ttb:A, 3ttb:B
13 3sxq:A 519 42 0.0213 0.0270 0.3333 8.7 3sxq:B, 3ttb:A, 3ttb:B
14 5w7c:C 420 44 0.0274 0.0429 0.4091 2.4 5w78:B, 5w7c:D
15 6btm:A 221 84 0.0334 0.0995 0.2619 3.0
16 1qo8:A 564 89 0.0334 0.0390 0.2472 3.0 1qo8:D
17 4gyi:A 339 53 0.0274 0.0531 0.3396 3.1
18 3tvl:A 204 74 0.0319 0.1029 0.2838 3.3 3tvl:B
19 7bkb:D 549 43 0.0182 0.0219 0.2791 7.0 7bkb:d, 7bkc:D, 7bkc:d, 7bkd:D, 7bke:D
20 3f29:B 520 55 0.0243 0.0308 0.2909 9.2 3d1i:A, 3d1i:B, 3f29:A, 3fo3:A, 3fo3:B, 3gm6:A, 3gm6:B, 4l38:A, 4l38:B, 4l3x:A, 4l3x:B, 4l3y:A, 4l3y:B, 4l3z:A, 4l3z:B, 3lg1:A, 3lg1:B, 3lgq:A, 3lgq:B, 3mmo:A, 3mmo:B, 2ot4:A, 2ot4:B, 3owm:A, 3owm:B, 4q0t:A, 4q0t:B, 4q17:A, 4q17:B, 4q1o:A, 4q1o:B, 4q4u:A, 4q4u:B, 4q5b:A, 4q5b:B, 4q5c:A, 4q5c:B, 3rkh:A, 3rkh:B, 3s7w:A, 3s7w:B, 3sce:A, 3sce:B, 3uu9:A, 3uu9:B, 2zo5:A, 2zo5:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218