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BioLiP
>protein
TEQIQKRTAAIQKRIAAIQKRIYAMTASAGAGMSIEEITKQIAAIQLRIVGDQVQIAYQTASMSTEEIQKQIAAIETQIC
KIEAAIELKEAGITSDFYFELINKAKTCEGVEALKEHILAAHT

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6zie:A 123 123 1.0000 1.0000 1.0000 1.41e-82
2 3tr9:A 277 28 0.0732 0.0325 0.3214 0.90 3tr9:B, 3tr9:C, 3tr9:D
3 3u4c:A 254 42 0.1301 0.0630 0.3810 0.96
4 4kcf:A 407 66 0.1220 0.0369 0.2273 1.1 3m9v:A
5 2f02:A 319 81 0.2033 0.0784 0.3086 1.4 2f02:B
6 8bx8:C 3947 90 0.2033 0.0063 0.2778 5.6 7k58:C, 7k5b:C, 7kek:C
7 6jla:C 184 79 0.2033 0.1359 0.3165 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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