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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TEKTPDDVFKLAKDEKVEYVDVRFCDLPGIMQHFTIPASAFDKSVFDDGLAFDGSSIRGFQSIHESDMLLLPDPETARID
PFRAAKTLNINFFVHDPFTLEPYSRDPRNIARKAENYLISTGIADTAYFGAEAEFYIFDSVSFDSRANGSFYEVDAISGW
WNTGAATEADGSPNRGYKVRHKGGYFPVAPNDQYVDLRDKMLTNLINSGFILEKGHHEVGSGGQAEINYQFNSLLHAADD
MQLYKYIIKNTAWQNGKTVTFMPKPLFGDNGSGMHCHQSLWKDGAPLMYDETGYAGLSDTARHYIGGLLHHAPSLLAFTN
PTVNSYKRLVPGYEAPINLVYSQRNRSACVRIPITGSNPKAKRLEFRSPDSSGNPYLAFSAMLMAGLDGIKNKIEPQAPV
DKDLYELPPEEAASIPQTPTQLSDVIDRLEADHEYLTEGGVFTNDLIETWISFKRENEIEPVNIRPHPYEFALYYDV

The query sequence (length=477) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1hto:A 477 477 1.0000 1.0000 1.0000 0.0 4acf:A, 4acf:B, 4acf:C, 4acf:D, 4acf:E, 4acf:F, 2bvc:A, 2bvc:B, 2bvc:C, 2bvc:D, 2bvc:E, 2bvc:F, 1hto:B, 1hto:C, 1hto:D, 1hto:E, 1hto:F, 1hto:G, 1hto:H, 1hto:I, 1hto:J, 1hto:K, 1hto:L, 1hto:M, 1hto:N, 1hto:O, 1hto:P, 1hto:Q, 1hto:R, 1hto:S, 1hto:T, 1hto:U, 1hto:V, 1hto:W, 1hto:X, 1htq:A, 1htq:B, 1htq:C, 1htq:D, 1htq:E, 1htq:F, 1htq:G, 1htq:H, 1htq:I, 1htq:J, 1htq:K, 1htq:L, 1htq:M, 1htq:N, 1htq:O, 1htq:P, 1htq:Q, 1htq:R, 1htq:S, 1htq:T, 1htq:U, 1htq:V, 1htq:W, 1htq:X, 2wgs:A, 2wgs:B, 2wgs:C, 2wgs:D, 2wgs:E, 2wgs:F, 2wgs:G, 2wgs:H, 2wgs:I, 2wgs:J, 2wgs:K, 2wgs:L, 2whi:A, 2whi:B, 2whi:C, 2whi:D, 2whi:E, 2whi:F, 4xyc:A, 4xyc:B, 4xyc:C, 4xyc:D, 4xyc:E, 4xyc:F, 4xyc:G, 4xyc:H, 4xyc:I, 4xyc:J, 4xyc:K, 4xyc:L, 4xyc:M, 4xyc:N, 4xyc:O, 4xyc:P, 4xyc:Q, 4xyc:R, 4xyc:S, 4xyc:T, 4xyc:U, 4xyc:V, 4xyc:W, 4xyc:X, 3zxr:A, 3zxr:B, 3zxr:C, 3zxr:D, 3zxr:E, 3zxr:F, 3zxv:A, 3zxv:B, 3zxv:C, 3zxv:D, 3zxv:E, 3zxv:F
2 4s17:A 452 475 0.5891 0.6217 0.5916 0.0 4s17:B, 4s17:C, 4s17:D, 4s17:E, 4s17:F
3 3ng0:A 465 475 0.5535 0.5677 0.5558 0.0
4 1f1h:A 468 474 0.5094 0.5192 0.5127 1.40e-173 1f1h:B, 1f1h:C, 1f1h:D, 1f1h:E, 1f1h:F, 1f1h:G, 1f1h:H, 1f1h:I, 1f1h:J, 1f1h:K, 1f1h:L, 1f52:A, 1f52:B, 1f52:C, 1f52:D, 1f52:E, 1f52:F, 1f52:G, 1f52:H, 1f52:I, 1f52:J, 1f52:K, 1f52:L, 1fpy:A, 1fpy:B, 1fpy:C, 1fpy:D, 1fpy:E, 1fpy:F, 1fpy:G, 1fpy:H, 1fpy:I, 1fpy:J, 1fpy:K, 1fpy:L, 2gls:A, 2gls:B, 2gls:C, 2gls:D, 2gls:E, 2gls:F, 2gls:G, 2gls:H, 2gls:I, 2gls:J, 2gls:K, 2gls:L
5 1lgr:A 445 474 0.4759 0.5101 0.4789 2.11e-152 1lgr:B, 1lgr:C, 1lgr:D, 1lgr:E, 1lgr:F, 1lgr:G, 1lgr:H, 1lgr:I, 1lgr:J, 1lgr:K, 1lgr:L, 2lgs:A, 2lgs:B, 2lgs:C, 2lgs:D, 2lgs:E, 2lgs:F, 2lgs:G, 2lgs:H, 2lgs:I, 2lgs:J, 2lgs:K, 2lgs:L
6 5zlp:J 478 479 0.4444 0.4435 0.4426 3.02e-138 5zlp:A, 5zlp:B, 5zlp:C, 5zlp:D, 5zlp:E, 5zlp:F, 5zlp:H, 5zlp:K, 5zlp:L, 5zlp:G, 5zlp:I
7 4s0r:D 447 475 0.3816 0.4072 0.3832 3.45e-98 4lnf:A, 4lnf:B, 4lnf:C, 4lnf:D, 4lnf:E, 4lnf:F, 4lnf:G, 4lnf:H, 4lnf:I, 4lnf:J, 4lnf:K, 4lnf:L, 4lni:A, 4lni:B, 4lni:C, 4lni:D, 4lni:E, 4lni:F, 4lni:G, 4lni:H, 4lni:I, 4lni:J, 4lni:K, 4lni:L, 4lnk:A, 4lnk:B, 4lnk:C, 4lnk:D, 4lnk:E, 4lnk:F, 4lnn:A, 4lnn:B, 4lnn:C, 4lnn:D, 4lnn:E, 4lnn:F, 4lnn:G, 4lnn:H, 4lnn:I, 4lnn:J, 4lnn:K, 4lnn:L, 4lno:A, 4lno:B, 4lno:C, 4lno:D, 4lno:E, 4lno:F, 4s0r:A, 4s0r:C, 4s0r:F, 4s0r:G, 4s0r:I, 4s0r:E, 4s0r:L, 4s0r:M, 4s0r:J, 4s0r:K, 4s0r:N, 4s0r:B, 4s0r:H, 7tfc:B, 7tfc:C, 7tfc:Q, 7tfc:R, 7tfc:F, 7tfc:G, 7tfc:H, 7tfc:P, 7tfc:O, 7tfc:S, 7tfc:I, 7tfc:N, 7tfc:T, 7tfc:A
8 7tfa:B 441 430 0.3543 0.3832 0.3930 2.99e-97 7tdp:A, 7tdp:C, 7tdp:B, 7tfa:L, 7tfa:Q, 7tfa:E, 7tfa:F, 7tfa:J, 7tfa:K, 7tfa:W, 7tfa:R, 7tfa:S, 7tfa:T, 7tfa:X, 7tfb:B, 7tfb:S, 7tfb:D, 7tfb:U, 7tfb:F, 7tfb:Y, 7tfb:J, 7tfb:K, 7tfb:Z, 7tfb:L, 7tfb:b, 7tfb:N, 7tfb:V, 7tfb:T, 7tfd:B, 7tfd:E, 7tfd:F, 7tfd:J, 7tfd:K, 7tfd:L, 7tfd:Q, 7tfd:R, 7tfd:S, 7tfd:T, 7tfd:W, 7tfd:X
9 8ooo:A 447 437 0.3459 0.3691 0.3776 1.13e-94 8ooo:L, 8ooo:B, 8ooo:H, 8ooo:C, 8ooo:J, 8ooo:D, 8ooo:F, 8ooo:E, 8ooo:G, 8ooo:I, 8ooo:K, 8ooq:A, 8ooq:L, 8ooq:B, 8ooq:H, 8ooq:C, 8ooq:J, 8ooq:D, 8ooq:F, 8ooq:E, 8ooq:G, 8ooq:I, 8ooq:K, 8ooq:P, 8ooq:c, 8ooq:Q, 8ooq:Y, 8ooq:S, 8ooq:a, 8ooq:T, 8ooq:V, 8ooq:U, 8ooq:X, 8ooq:Z, 8ooq:b
10 8ufj:B 444 478 0.3836 0.4122 0.3828 7.47e-94 8tfb:A, 8tfb:B, 8tfb:C, 8tfb:D, 8tfb:L, 8tfb:M, 8tfb:O, 8tfb:P, 8tfb:Q, 8tfb:V, 8tfb:X, 8tfb:Y, 8tfk:A, 8tfk:B, 8tfk:C, 8tfk:D, 8tfk:E, 8tfk:F, 8tfk:G, 8tfk:H, 8tfk:I, 8tfk:J, 8tfk:K, 8tfk:L, 8ufj:A, 8ufj:C
11 8oox:B 438 443 0.3564 0.3881 0.3837 5.76e-91 8oow:A, 8oow:B, 8oow:C, 8oow:D, 8oow:E, 8oow:F, 8oow:G, 8oow:H, 8oow:I, 8oow:J, 8oow:K, 8oow:L, 8oox:A, 8ooz:A, 8ooz:B, 8ooz:C, 8ooz:D, 8ooz:E, 8ooz:F, 8ooz:K, 8ooz:G, 8ooz:H, 8ooz:I, 8ooz:J, 8ooz:L
12 7tf9:S 443 478 0.3564 0.3837 0.3556 1.09e-88 7ten:A, 7ten:E, 7ten:B, 7ten:D, 7ten:H, 7ten:J, 7ten:M, 7ten:O, 7ten:Q, 7ten:S, 7ten:U, 7ten:W, 7tf9:H, 7tf9:A, 7tf9:Q, 7tf9:C, 7tf9:O, 7tf9:B, 7tf9:P, 7tf9:R, 7tf9:I, 7tf9:T, 7tf9:F, 7tf9:G, 7tf9:N, 7tfe:A, 7tfe:G, 7tfe:H, 7tfe:I, 7tfe:B, 7tfe:C, 7tfe:J, 7tfe:D, 7tfe:E, 7tfe:F, 7tfe:K, 7tfe:L
13 7tdv:C 443 445 0.3312 0.3567 0.3551 7.05e-81 7tdv:A, 7tdv:D, 7tdv:E, 7tdv:B, 7tdv:H, 7tf6:C, 7tf6:O, 7tf6:R, 7tf6:F, 7tf6:N, 7tf6:H, 7tf6:L, 7tf6:T, 7tf6:A, 7tf6:S, 7tf6:G, 7tf6:B
14 7cqw:A 430 436 0.2809 0.3116 0.3073 1.82e-46 7cqn:A, 7cqn:B, 7cqn:C, 7cqq:A, 7cqq:B, 7cqq:C, 7cqu:A, 7cqu:B, 7cqu:C, 7cqw:B, 7cqw:C, 7cqx:A, 7cqx:B, 7cqx:C
15 5dm3:C 396 375 0.2348 0.2828 0.2987 3.94e-34 5dm3:D, 5dm3:B, 5dm3:E, 5dm3:F
16 8wwu:B 492 399 0.2579 0.2500 0.3083 3.15e-32 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
17 5dm3:A 374 207 0.1656 0.2112 0.3816 1.82e-31
18 4hpp:A 426 466 0.2537 0.2840 0.2597 2.48e-25
19 2d3a:A 353 163 0.0943 0.1275 0.2761 1.86e-04 2d3a:B, 2d3a:C, 2d3a:D, 2d3a:E, 2d3a:F, 2d3a:G, 2d3a:H, 2d3a:I, 2d3a:J, 2d3b:A, 2d3b:B, 2d3b:C, 2d3b:D, 2d3b:E, 2d3b:G, 2d3b:F, 2d3b:I, 2d3b:J, 2d3b:H, 2d3c:A, 2d3c:B, 2d3c:C, 2d3c:D, 2d3c:E, 2d3c:F, 2d3c:G, 2d3c:H, 2d3c:I, 2d3c:J
20 8ecy:A 371 159 0.0860 0.1105 0.2579 0.001 8dnu:A, 8ecy:J, 8ecy:L, 8ecy:Q, 8ecy:H, 8ecy:D, 8ecy:B, 8ecy:F, 8ecy:I, 8ecy:M, 2ojw:A, 2ojw:B, 2ojw:C, 2ojw:D, 2ojw:E, 2qc8:A, 2qc8:B, 2qc8:C, 2qc8:D, 2qc8:E, 2qc8:F, 2qc8:G, 2qc8:H, 2qc8:I, 2qc8:J, 2uu7:A, 2uu7:B, 2uu7:C, 2uu7:D, 2uu7:E, 2uu7:F, 2uu7:G, 2uu7:H, 2uu7:I, 2uu7:J, 2uu7:K, 2uu7:L, 2uu7:M, 2uu7:N, 2uu7:O
21 7cpr:A 367 356 0.1677 0.2180 0.2247 0.002 7cpr:B, 7cpr:C, 7cpr:D, 7cpr:E, 7cpr:F, 7cpr:G, 7cpr:H, 7cpr:I, 7cpr:J
22 3o6x:A 638 75 0.0545 0.0408 0.3467 0.34 3o6x:B, 3o6x:C, 3o6x:D, 3o6x:E, 3o6x:F
23 6shu:A 316 70 0.0419 0.0633 0.2857 3.0
24 1ons:A 278 53 0.0398 0.0683 0.3585 4.4
25 6py3:B 238 41 0.0335 0.0672 0.3902 5.4 6pxy:A, 6py3:A, 6py4:A, 6py5:A, 6pyi:A, 6q0f:A, 6q0g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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