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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCK
LATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLA
SLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQP
CTDESGEQPFNITDADWKSFFVRLWGRLDLIDEEEDSEEDGDSM

The query sequence (length=284) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7apd:C 287 284 1.0000 0.9895 1.0000 0.0 5a9k:A, 5a9k:B, 5a9k:C, 7apd:D, 7apd:E, 7apd:F, 7apd:A, 2gxa:B, 2gxa:C, 2gxa:D, 2gxa:E, 2gxa:F, 2gxa:G, 2gxa:H, 2gxa:I, 2gxa:J, 2gxa:K, 2gxa:L, 2gxa:A, 2v9p:A, 2v9p:B, 2v9p:C, 2v9p:H, 2v9p:I
2 5j4y:A 363 121 0.1303 0.1019 0.3058 0.001 5j40:A, 5j47:A, 5j4v:A
3 4gdf:A 497 121 0.1197 0.0684 0.2810 0.003 5d9i:A, 5d9i:B, 4e2i:A, 4e2i:B, 4e2i:C, 4e2i:D, 4e2i:E, 4e2i:F, 4e2i:G, 4e2i:H, 4e2i:I, 4e2i:J, 4e2i:K, 4e2i:L, 4fgn:A, 4fgn:B, 4gdf:B, 4gdf:E, 4gdf:F, 2h1l:A, 2h1l:B, 2h1l:C, 2h1l:D, 2h1l:E, 2h1l:F, 2h1l:G, 2h1l:H, 2h1l:I, 2h1l:J, 2h1l:K, 2h1l:L, 2itl:A, 2itl:B, 1n25:A, 1n25:B, 2nl8:A, 2ntc:A, 2ntc:B, 1svl:A, 1svl:B, 1svl:C, 1svm:A, 1svm:F, 1svm:B, 1svm:C, 1svm:D, 1svm:E, 1svo:A, 1svo:B
4 7suk:SI 802 69 0.0739 0.0262 0.3043 0.092 7d63:RJ, 6ke6:RJ, 6lqp:RJ, 6lqq:RJ, 6lqr:RJ, 6lqu:RJ, 6lqv:RJ, 5wlc:SI
5 7ajt:CL 781 69 0.0739 0.0269 0.3043 0.096 7d5s:RJ, 6zqa:CL, 6zqb:CL, 6zqc:CL
6 7d4i:RJ 738 69 0.0739 0.0285 0.3043 0.098 7d5t:RJ, 6lqs:RJ, 6lqt:RJ
7 7aju:CL 808 69 0.0739 0.0260 0.3043 0.099 6zqd:CL, 6zqe:CL, 6zqf:CL, 6zqg:CL
8 3a47:A 586 133 0.1162 0.0563 0.2481 0.13 3a4a:A, 3aj7:A, 3axh:A, 3axi:A
9 7wtl:CL 610 69 0.0739 0.0344 0.3043 0.14 5wyj:B1, 5wyk:B1
10 6n8n:W 377 44 0.0563 0.0424 0.3636 0.38 6n8o:W
11 6qtz:o 325 44 0.0563 0.0492 0.3636 0.39 6qik:o, 6ri5:o, 6rzz:o, 6s05:o
12 4rh7:A 3005 120 0.1021 0.0097 0.2417 0.44
13 6sc2:B 3930 120 0.1021 0.0074 0.2417 0.50 6rla:A, 6rla:B, 6sc2:A
14 6c5x:A 151 61 0.0739 0.1391 0.3443 0.52
15 5d4w:A 688 69 0.0704 0.0291 0.2899 0.56 5d4w:B, 5d4w:C, 5zui:A
16 6h4d:A 274 132 0.1197 0.1241 0.2576 0.57
17 5t62:W 306 44 0.0563 0.0523 0.3636 0.64
18 5l4g:L 389 24 0.0423 0.0308 0.5000 0.78 5gjq:L, 5gjr:L, 5gjr:z, 5m32:f, 6msb:E, 6msd:E, 6mse:E, 6msg:E, 6msh:E, 6msj:E, 7qxn:E, 7qxp:E, 7qxu:E, 7qxw:E, 7qxx:E, 7qy7:E, 7qya:E, 5t0c:AE, 5t0c:BE, 5t0g:E, 5t0h:E, 5t0i:E, 5t0j:E, 5vfp:E, 5vfr:E, 5vfs:E, 7w37:E, 7w38:E, 7w39:E, 7w3a:E, 7w3b:E, 7w3c:E, 7w3f:E, 7w3i:E, 7w3j:E, 7w3k:E, 7w3m:E, 6wjd:E, 6wjn:E
19 6sh3:A 376 84 0.0775 0.0585 0.2619 0.82 6sh3:B, 6sh3:C, 6sh3:D, 6sh3:E, 6sh3:F, 6sh3:G
20 7lar:D 183 137 0.1162 0.1803 0.2409 0.84 7lar:E, 7lar:A, 7lar:B, 7lar:C, 7las:D, 7las:E, 7las:A, 7las:B, 7las:C
21 5ucv:A 187 107 0.1092 0.1658 0.2897 1.6
22 8c0v:B 1030 30 0.0352 0.0097 0.3333 1.7 8c0v:D, 8c0v:F, 8c0w:A, 8c0w:C, 8c0w:E, 8u0v:D, 8u0v:F, 8u0v:B
23 8r64:B 303 126 0.1127 0.1056 0.2540 1.9 8r64:C, 8r64:D, 8r64:E, 8r64:F
24 3ieu:A 293 64 0.0704 0.0683 0.3125 2.0 3ieu:B
25 2inn:A 496 70 0.0810 0.0464 0.3286 2.0 2inn:B, 2inp:A, 2inp:B, 3u52:A, 3u52:B
26 7ola:B 446 87 0.0704 0.0448 0.2299 2.0 7ola:A, 7ola:C, 7ola:D, 7om0:A, 7om0:B, 7om0:C, 7om0:F, 7om0:D, 7om0:E
27 7o9k:C 255 19 0.0423 0.0471 0.6316 2.1 7o9m:C
28 3jaj:z 426 43 0.0423 0.0282 0.2791 2.4 6frk:x, 3jan:z, 7obq:x, 6r6g:AB
29 3pqc:B 194 81 0.0810 0.1186 0.2840 2.4 3pqc:A
30 7pd3:z 311 19 0.0423 0.0386 0.6316 2.4 8pk0:z, 8qsj:z
31 6jq0:F 524 83 0.0810 0.0439 0.2771 2.7
32 7obr:x 488 43 0.0423 0.0246 0.2791 2.7 2go5:W, 2j37:W, 5l3q:A, 5l3q:C, 1mfq:C, 7nfx:x, 7qwq:x, 1ry1:W, 4ue5:D, 6y2z:A, 6y32:A, 6y32:C, 6y32:E, 6y32:G
33 8h3h:A 539 66 0.0634 0.0334 0.2727 2.9 8h3h:B, 8h3h:C, 8h3h:D, 8h3h:E, 8h3h:F, 8juw:A, 8juw:B, 8juw:C, 8juw:D, 8juw:E, 8juw:F, 8juy:A, 8juy:B, 8juy:C, 8juy:D, 8juy:E, 8juy:F, 8juz:A, 8juz:B, 8juz:C, 8juz:D, 8juz:E, 8juz:F
34 6jq0:E 577 66 0.0669 0.0329 0.2879 3.1 6jq0:B, 6jq0:C, 6jq0:D
35 2g8y:A 359 64 0.0739 0.0585 0.3281 3.2 2g8y:B
36 6jq0:A 516 66 0.0669 0.0368 0.2879 3.3
37 7btb:m 469 22 0.0423 0.0256 0.5455 3.5 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
38 4xgu:B 382 63 0.0669 0.0497 0.3016 3.5 4xgu:E
39 6gej:Y 447 59 0.0634 0.0403 0.3051 3.5 8ets:W, 8ets:U, 8ets:Y, 8etu:W, 8etu:U, 8etu:Y, 8etw:W, 8etw:U, 8etw:Y, 8eu9:W, 8eu9:U, 8eu9:Y, 8euf:W, 8euf:U, 8euf:Y, 6gej:U, 6gej:W, 6gen:U, 6gen:W, 6gen:Y
40 2hyd:A 578 87 0.0845 0.0415 0.2759 3.5 2hyd:B, 2onj:A, 2onj:B
41 6xrs:B 392 50 0.0669 0.0485 0.3800 3.6 6xrs:A, 6xrs:D, 6xrs:C
42 6chs:H 550 105 0.0951 0.0491 0.2571 3.7 6chs:I, 6chs:J, 6chs:D, 6chs:E, 6chs:F
43 6pog:B 236 105 0.0845 0.1017 0.2286 4.4
44 6rn4:F 680 50 0.0528 0.0221 0.3000 4.7 6rn3:F, 6rn4:A
45 8q4d:L 247 29 0.0423 0.0486 0.4138 4.8 5bq5:A, 5bq5:B, 5bq5:C, 8q3w:J, 8q3w:A, 8q3w:B, 8q3w:D, 8q3w:C, 8q3w:E, 8q3w:F, 8q3w:G, 8q3w:H, 8q3w:I, 8q4d:N, 8q4d:I, 8q4d:K, 8q4d:V, 8q4d:X, 8q4d:S, 8q4d:U, 8q4d:E, 8q4d:F, 8q4d:G, 8q4d:H, 8q4d:J, 8q4d:M, 8q4d:O, 8q4d:P, 8q4d:Q, 8q4d:R, 8q4d:T, 8q4d:W
46 5dn8:A 405 29 0.0458 0.0321 0.4483 5.0
47 6qs4:C 630 50 0.0528 0.0238 0.3000 5.2 5og1:C, 5og1:D, 6qs4:D, 6qs4:E, 6qs6:C, 6qs6:D, 6qs7:C, 6qs7:D, 6qs7:E, 6qs8:C, 6qs8:D, 6qs8:E
48 8gbj:C 317 39 0.0528 0.0473 0.3846 5.3 8faz:C, 8ouy:B, 8ouz:B
49 6qs4:B 582 50 0.0528 0.0258 0.3000 5.4 6oax:C, 6oax:E, 6oax:D, 6oax:B, 6oax:A, 6oax:F, 6oay:C, 6oay:E, 6oay:D, 6oay:B, 6oay:A, 5og1:B, 6og1:F, 6og1:A, 6og2:A, 6qs4:A, 6qs4:F, 6qs6:A, 6qs6:B, 6qs6:E, 6qs6:F, 6qs7:A, 6qs7:B, 6qs7:F, 6qs8:A, 6qs8:B, 6qs8:F
50 6fvt:J 405 27 0.0352 0.0247 0.3704 5.6 6ef0:J, 6ef1:J, 6ef2:J, 6ef3:J, 6fvu:J, 6fvv:J, 6fvw:J, 6fvx:J, 6fvy:J, 5mp9:J, 5mpa:J, 5mpb:J, 5mpc:J, 7qo4:J, 7qo5:J, 7qo6:J
51 6n8j:m 378 18 0.0387 0.0291 0.6111 5.7
52 7of1:m 229 18 0.0387 0.0480 0.6111 5.8
53 4ciu:A 657 41 0.0458 0.0198 0.3171 5.9
54 5og1:A 819 50 0.0528 0.0183 0.3000 5.9 5ofo:C, 5ofo:F, 5ofo:E, 5ofo:D, 5ofo:B, 5ofo:A, 5og1:E, 6rn2:A, 6rn2:B, 6rn2:C, 6rn2:D, 6rn2:F, 6rn2:E, 6rn3:A, 6rn3:B, 6rn3:C, 6rn3:D, 6rn3:E, 6rn4:B, 6rn4:C, 6rn4:D, 6rn4:E
55 6oay:F 558 41 0.0458 0.0233 0.3171 6.3 6og2:F
56 8i9w:CL 397 26 0.0423 0.0302 0.4615 6.5 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
57 6l3m:B 420 61 0.0669 0.0452 0.3115 7.0 6l3m:A, 6l3m:C, 6l3m:D, 6l3n:A, 6l3n:B, 6l3n:C, 6l3n:D
58 6msg:C 396 27 0.0352 0.0253 0.3704 7.0 8cvt:C, 5gjq:J, 5gjr:J, 5gjr:x, 5l4g:J, 6msb:C, 6msd:C, 6msh:C, 6msj:C, 6msk:C, 7qxn:C, 7qxp:C, 7qxu:C, 7qxx:C, 7qy7:C, 7qyb:C, 5t0c:AC, 5t0c:BC, 5t0g:C, 5t0h:C, 5vfq:C, 5vfs:C, 7w37:C, 7w38:C, 7w39:C, 7w3a:C, 7w3b:C, 7w3c:C, 7w3f:C, 7w3g:C, 7w3h:C, 7w3i:C, 7w3j:C, 7w3m:C, 6wjd:C
59 6j0x:B 466 93 0.0810 0.0494 0.2473 8.2 6j0w:A, 6j0w:B, 6j0x:A, 6j0x:C, 6j0x:D
60 1wf3:A 296 19 0.0352 0.0338 0.5263 8.3
61 5m32:h 332 27 0.0352 0.0301 0.3704 8.7
62 5x40:A 280 44 0.0528 0.0536 0.3409 8.7 5x40:B
63 6yxy:EQ 471 49 0.0563 0.0340 0.3265 9.2
64 3iev:A 302 38 0.0493 0.0464 0.3684 9.2 7c1o:A, 3r9w:A, 3r9x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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