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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TEIRVHQGDLPNLDNYRIDAVAVDTETLGLQPHRDRLCVVQLSSGDGTADVIQIAKGQKSAPNLVRLLSDRDITKIFHFG
RFDLAILAHTFGVMPDVVFCTKIASKLTRTYTDRHGLKEICGELLNVNISKQQQSSDWAAETLSRAQIEYAASDVLYLHR
LKDIFEERLKREERESVAKACFQFLPMRANLDLLGWSEIDIFAHS

The query sequence (length=205) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mpo:F 207 205 1.0000 0.9903 1.0000 3.78e-154 7mpl:A, 7mpl:E, 7mpl:C, 7mpl:I, 7mpl:G, 7mpl:K, 7mpl:O, 7mpl:M, 7mpm:A, 7mpm:E, 7mpm:C, 7mpm:I, 7mpm:G, 7mpm:K, 7mpm:O, 7mpm:M, 7mpn:A, 7mpn:C, 7mpn:E, 7mpn:G, 7mpn:I, 7mpn:K, 7mpn:M, 7mpn:O, 7mpo:A, 7mpo:B, 7mpo:C, 7mpo:D, 7mpo:E, 7mpo:G, 7mpo:H, 7mpp:A, 7mpp:E, 7mpp:G, 7mpp:C, 7mpp:K, 7mpp:I, 7mpp:M, 7mpp:O, 7mpq:G, 7mpq:K, 7mpq:A, 7mpq:E, 7mpq:C, 7mpq:I, 7mpq:O, 7mpq:M, 7mqb:A, 7mqb:C, 7mqb:E, 7mqb:G, 7mqb:I, 7mqb:K, 7mqb:M, 7mqb:O, 7mqc:A, 7mqc:C, 7mqc:E, 7mqc:G, 7mqc:I, 7mqc:K, 7mqc:M, 7mqc:O, 7mqd:A, 7mqd:C, 7mqd:E, 7mqd:G, 7mqd:I, 7mqd:K, 7mqd:M, 7mqd:O, 7mqe:A, 7mqe:C, 7mqe:E, 7mqe:G, 7mqe:I, 7mqe:K, 7mqe:M, 7mqe:O, 7mqf:A, 7mqf:C, 7mqf:E, 7mqf:G, 7mqf:I, 7mqf:K, 7mqf:M, 7mqf:O, 7mqg:A, 7mqg:C, 7mqg:E, 7mqg:G, 7mqg:I, 7mqg:K, 7mqg:M, 7mqg:O, 7mqh:A, 7mqh:C, 7mqh:E, 7mqh:G, 7mqh:I, 7mqh:K, 7mqh:M, 7mqh:O, 7mqi:A, 7mqi:C, 7mqi:E, 7mqi:G, 7mqi:I, 7mqi:K, 7mqi:M, 7mqi:O
2 7mpt:A 206 203 0.7756 0.7718 0.7833 6.45e-122 7mpt:B, 7mpu:B
3 5zo4:A 207 204 0.6878 0.6812 0.6912 1.23e-96 5zo4:B, 5zo5:A, 5zo5:B
4 1yt3:A 375 140 0.2195 0.1200 0.3214 1.12e-12
5 5vzj:J 460 177 0.2098 0.0935 0.2429 1.67e-06
6 5c0w:K 576 177 0.2098 0.0747 0.2429 2.59e-06 5c0y:B, 5c0y:A, 2hbk:A, 2hbl:A, 2hbm:A, 5k36:J, 4oo1:J, 4wfd:A
7 3sah:B 382 155 0.2146 0.1152 0.2839 3.33e-05
8 6k18:A 199 153 0.1951 0.2010 0.2614 4.40e-04 6k18:B, 6k1a:A, 6k1a:B, 6k1b:A, 6k1b:B, 6k1d:A, 6k1d:B, 6k1e:A, 6k1e:B
9 7c4c:A 332 115 0.1756 0.1084 0.3130 0.025 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
10 4aou:A 401 118 0.1317 0.0673 0.2288 0.88
11 5npu:A 547 76 0.0927 0.0347 0.2500 2.2 5npu:B, 5npu:C, 5npu:D
12 1kfd:A 560 110 0.1317 0.0482 0.2455 5.0
13 8oo6:A 604 110 0.1317 0.0447 0.2455 5.7 1d8y:A, 1d9d:A, 1d9f:A, 1kfs:A, 2kfn:A, 2kfz:A, 1kln:A, 1krp:A, 1ksp:A, 2kzm:A, 2kzz:A, 8ooy:A, 1qsl:A
14 7ajt:JA 812 127 0.1659 0.0419 0.2677 7.3 7d63:RL, 6ke6:RL, 6lqp:RL, 6lqq:RL, 6lqr:RL, 6lqu:RL, 6lqv:RL, 7suk:LX, 6zqb:JA, 6zqc:JA
15 4uhm:A 435 61 0.1073 0.0506 0.3607 7.6 4uhn:A, 4uho:A
16 6aqg:C 490 112 0.1415 0.0592 0.2589 7.7 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218