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BioLiP
>protein
TEIEVTGWEQALKWLRSNTSKYATATSWWDYGYWIESSLLGNRRASADGGHARDRDHILALFLARDGNISEVDFESWELN
YFIIYLNDWAKFNAISYLGGAITRKEYNGDENGRGRVTTILLTQAAGNVYVNPYARIVIKVIQQNKTRRIAVNIGQLECS
PILSVAFPGNIKIKGSGRCSDGSPFPYVVYLTPSLGVLAYYKVATSNFVKLAFGIPTSSYSEFAEKLFSNFIPVYQYGSV
IVYEFRPFAIYKIEDFINGTWREVGKLSPGKHTLRLYISAFGRDIKNATLYVYALNGTKIIKRIKVGEIKYMNHLEEYPI
IVNVTLPTAQKYRFILAQKGPVGVLTGPVRVNGKITNPAYIMREGESGRLELKVGVDKEYTADLYLRATFIYLVRKGGKS
NEDYDASFEPHMDTFFITKLKEGIKLRPGENEIVVNAEMPKNAISSYKEKLEKEHGDKLIIRGIRVEPVFIVEKEYTMIE
VSASAPHHSS

The query sequence (length=490) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3vu1:B 490 490 1.0000 1.0000 1.0000 0.0 3vu1:A
2 3wov:A 457 481 0.7082 0.7593 0.7214 0.0
3 5aza:A 836 477 0.6245 0.3660 0.6415 0.0 5b3z:A, 5b3z:B, 5b3z:C, 5b3z:D, 2zag:A, 2zag:B, 2zag:C, 2zag:D, 2zai:A, 2zai:B, 2zai:C, 2zai:D
4 6s7t:A 706 40 0.0367 0.0255 0.4500 0.005
5 6s7o:A 656 41 0.0367 0.0274 0.4390 0.010 6ftg:5, 6fti:5, 6ftj:5, 8pn9:A
6 6ezn:F 650 31 0.0245 0.0185 0.3871 0.84 8agb:A, 8age:A, 6c26:A, 7oci:F
7 8agc:A 697 25 0.0224 0.0158 0.4400 0.93
8 3waj:A 793 57 0.0367 0.0227 0.3158 1.9
9 7e9s:A 867 57 0.0367 0.0208 0.3158 2.0 5gmy:A, 3wak:A
10 2xgj:B 777 23 0.0245 0.0154 0.5217 3.1
11 1cxa:A 124 56 0.0347 0.1371 0.3036 3.2 1cxc:A, 2cxb:A, 2cxb:B, 1l9b:C, 1l9j:C, 1l9j:D
12 6fsz:MM 978 23 0.0245 0.0123 0.5217 3.8 7ajt:EN, 7aju:EN, 6ft6:MM, 5ooq:A, 5ooq:B, 2xgj:A
13 8wiv:D 602 96 0.0531 0.0432 0.2708 4.7 8wk0:D
14 6mso:A 540 47 0.0327 0.0296 0.3404 5.1 6mso:B, 6mso:C, 6mso:D
15 8fru:Z 134 133 0.0735 0.2687 0.2707 5.1 8brm:La, 8bsi:La, 8bsj:La, 8btd:La, 8btr:La, 7pwg:Z, 7pwo:Z2
16 8wiv:O 657 96 0.0531 0.0396 0.2708 5.1 8wiv:M, 8wiv:L, 8wj3:M, 8wj3:O, 8wj3:L, 8wk0:M, 8wk0:O, 8wk0:L
17 2c3c:A 522 175 0.0918 0.0862 0.2571 5.4 2c3c:B, 2c3d:A, 2c3d:B, 7mgn:A, 7mgn:B, 7mgo:B, 1mo9:A, 1mo9:B, 1mok:A, 1mok:B, 1mok:C, 1mok:D, 3q6j:A, 3q6j:B
18 3aag:A 267 82 0.0408 0.0749 0.2439 7.6
19 7tbu:A 450 123 0.0592 0.0644 0.2358 7.6 7tbu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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