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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TEFPLGCSPNVTTPKNGLSMELYSYDYLKSGSNPCWDAAYLDPNYPRTGYKSHRLLAKVENVAGNINFYYHAPMGCTSLF
DTLPQAYNYRTPLTMTNFTMLLYGYFKPKVTGYHTFTISADDLLFVNFGAGNAFDCCKRESSADDFGNYQAYAVWGSQTA
KDDLTVHLDAGLYYPIRIFFNNRDNDGALSLTLKTESDPNPVIDFSDYFYSFDDTKDGCPGLVSYD

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4coy:A 232 226 1.0000 0.9741 1.0000 2.89e-169 4cou:A, 4cov:A, 4cow:A, 4coz:A
2 6y9j:A 231 225 0.7876 0.7706 0.7911 4.62e-135 4a3x:A, 4af9:A, 4afa:A, 4afb:A, 4afc:A, 4asl:A, 4d3w:A
3 6y98:A 225 219 0.4248 0.4267 0.4384 2.28e-55 4cp0:A, 4cp1:A, 4cp2:A
4 4gq7:A 220 223 0.2876 0.2955 0.2915 1.89e-13 4lhk:A, 4lhk:B
5 2xjp:A 258 130 0.1903 0.1667 0.3308 7.38e-13 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A
6 6hos:A 213 179 0.2212 0.2347 0.2793 6.95e-12 6hos:B
7 5a3l:A 209 179 0.2301 0.2488 0.2905 5.75e-09 5a3l:B, 5a3l:C, 5a3l:D, 5a3m:A, 5a3m:B, 5a3m:C, 5a3m:D
8 4fln:B 464 41 0.0664 0.0323 0.3659 0.21 4fln:A, 4fln:C
9 4hcx:A 402 28 0.0487 0.0274 0.3929 1.0 4hcx:B
10 3bs1:A 103 42 0.0752 0.1650 0.4048 1.6 4xqj:A, 4xqj:D, 4xqn:A, 4xqn:J, 4xqn:D, 4xqn:G, 4xqq:B, 4xxe:A, 4xxe:D, 4xyq:A
11 3pmo:A 357 93 0.1283 0.0812 0.3118 4.3 6uec:A
12 8ep4:A 265 69 0.0796 0.0679 0.2609 8.1 8ep4:B, 8ep4:C, 8ew1:A, 8ew1:B, 8ew1:C
13 6sxu:AAA 500 71 0.0929 0.0420 0.2958 8.3 1pz2:A, 1pz2:B, 1qw8:A, 1qw8:B, 1qw9:A, 1qw9:B, 6sxu:BBB, 6sxv:A, 6sxv:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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