Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TEEEQIEKDLQGLQEKQRLNVKRERRRKNEMKQKELQRMQMNMESLFNLKTAEKTGILNDLAKGKKRMIFTMIKDKDSAA
DADDLESELNAMYSDYKTRRSERDAKFRAKQARAITNLISKLKGQEGDHKLSSKARMIFNDPIFNNVEPFDSDYDSEEEK
NQTKKEKHSRDENLPDWFLEDAMNARPIK

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7nad:w 328 190 1.0000 0.5762 0.9947 1.13e-133 7r72:w
2 7nac:w 672 271 1.0000 0.2812 0.6974 1.27e-112 7naf:w, 7r6k:w, 7r7a:w, 7r7o:A, 7r7o:B
3 8v87:w 280 208 0.7725 0.5214 0.7019 1.19e-92
4 7u0h:w 321 110 0.4497 0.2648 0.7727 8.25e-45
5 8ia0:CS 629 225 0.4339 0.1304 0.3644 9.84e-14 8i9w:CS, 8i9x:CS, 8i9y:CS, 8i9z:CS
6 7r6q:w 68 110 0.2646 0.7353 0.4545 6.87e-10
7 8esq:w 504 147 0.2169 0.0813 0.2789 2.06e-05 8esr:w
8 6elz:w 436 96 0.1799 0.0780 0.3542 3.28e-05 6em5:w
9 8etc:w 420 103 0.1587 0.0714 0.2913 7.78e-05
10 7ohr:w 198 64 0.1376 0.1313 0.4062 2.62e-04
11 6ylx:w 360 10 0.0529 0.0278 1.0000 2.2
12 3vti:C 305 35 0.0635 0.0393 0.3429 3.0 3vti:D
13 8pnt:A 749 41 0.0688 0.0174 0.3171 3.1 8by6:A, 6d0y:C, 1n52:A, 5oo6:D, 5oo6:G, 5oo6:J, 5oo6:M, 5oo6:P, 5oob:I, 5oob:A, 8pmp:A
14 7ohv:w 69 14 0.0476 0.1304 0.6429 3.2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218