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BioLiP
>protein
TEDEIRKLRKLLEEAEKKLYKLEDKTRRSEEISKTDDDPKAQSLQLIAESLMLIAESLLIIAISLLLSS

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tj1:A 71 56 0.7681 0.7465 0.9464 9.92e-28 6tms:D, 6tms:J
2 3k6j:A 430 49 0.2174 0.0349 0.3061 0.84
3 7sqc:1B 1660 55 0.2319 0.0096 0.2909 1.2
4 7aia:AAA 259 60 0.2899 0.0772 0.3333 1.5
5 6gk5:A 403 45 0.1884 0.0323 0.2889 4.6 6gk6:A
6 4yp9:B 342 32 0.1739 0.0351 0.3750 6.4 2hj9:A, 2hj9:B, 1jx6:A, 4yp9:A, 4yr7:A, 4yr7:B, 4yrz:A, 4yrz:B
7 7cce:A 159 18 0.1449 0.0629 0.5556 8.0
8 7nyw:B 858 35 0.2029 0.0163 0.4000 8.7
9 7zlt:C 415 44 0.1739 0.0289 0.2727 9.6 3ivy:A, 3iw0:A, 3iw1:A, 3iw2:A, 7qke:A, 7qnn:A, 7qwn:A, 7qwn:B, 7qwn:C, 7r1i:A, 7r1i:B, 7r1i:C, 7r3u:A, 7r3u:B, 7r3u:C, 2x5l:A, 2x5w:A, 2xc3:A, 2xn8:A, 7yxf:A, 7yxf:B, 7yxf:C, 7zgl:A, 7zgl:B, 7zgl:C, 7zic:A, 7zic:B, 7zic:C, 7zlt:A, 7zlt:B, 7zlz:A, 7zlz:B, 7zlz:C, 7zqr:A, 7zqr:B, 7zqr:C, 7zsu:A, 7zsu:B, 7zsu:C, 7zt0:A, 7zt0:B, 7zxd:A, 7zxd:B, 7zxd:C
10 5n1q:A 549 23 0.1304 0.0164 0.3913 9.6 5n1q:D, 5n28:A, 5n28:D, 5n2a:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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