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BioLiP
>protein
TEADPAILSRRQKQIDYGKNTAATPNKYGKYSRRAFDGMVKIWRKSM

The query sequence (length=47) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4tv0:A 47 47 1.0000 1.0000 1.0000 2.70e-30
2 4tuw:A 71 63 0.9362 0.6197 0.6984 3.22e-24 4tuw:B, 4tux:B, 4tux:A
3 4qoz:C 73 66 0.5745 0.3699 0.4091 1.40e-11 4l8r:C
4 2p0j:A 203 28 0.2553 0.0591 0.4286 1.9 2p0j:B, 1vrr:A, 1vrr:B
5 5ulj:B 386 36 0.2766 0.0337 0.3611 1.9 5ulj:A
6 7wm6:A 240 39 0.2766 0.0542 0.3333 2.3 7wm6:C, 7wm6:D
7 3vte:A 502 49 0.2979 0.0279 0.2857 2.8
8 6j9f:D 1215 18 0.2128 0.0082 0.5556 3.3 6j9e:D
9 4krh:A 430 41 0.2553 0.0279 0.2927 5.1 4krh:B, 4kri:A, 4kri:B, 4kri:C
10 6iqy:A 536 22 0.2340 0.0205 0.5000 5.3 3abg:A, 3abg:B, 6i3j:A, 6i3j:B, 6i3k:A, 6i3k:B, 6i3l:A, 6i3l:B, 6iqx:A, 6iqx:B, 6iqy:B, 6iqz:A, 2xll:A, 2xll:B, 2xll:C, 2xll:D
11 8i0w:L 419 33 0.1915 0.0215 0.2727 5.8 5yzg:L
12 6icz:L 454 29 0.1915 0.0198 0.3103 7.0 5xjc:L
13 7mfm:I 490 18 0.1702 0.0163 0.4444 7.2 7mfm:J, 7mft:I
14 6id0:L 475 29 0.1915 0.0189 0.3103 7.6 6id1:L
15 3j7a:S 128 32 0.2340 0.0859 0.3438 9.4 3jbn:S, 3jbo:S, 3jbp:S, 6okk:S, 8tpu:SS
16 9jd2:A 273 29 0.2340 0.0403 0.3793 9.6 9jhv:A, 1wta:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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