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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDVIVVGNGVLGLSVGVEIARTRPDVRVTLLGKPARQYGATPAAGAMLGAFGEVTAHALASEHGRKKHALAVQAQRLWPE
WIESLEATGTAADGRIKTADDTVVLLNTVGHSALDDANFAAVLTALKEANAPHEEIAVESVDWIDPDPNSRPLRALHIEG
EGSVDSGILLAALERSFLQAGGRLHPVDATEIRASHGRVEGVVTDDGDFLPAGHVVVAAGARSQRLVAALPGLAHRIPRI
YDGVGVSALVDTWDGSGPATVLRTSNRAFACGLHLVPRAGGSVYIGATNAVCLEPRGAASIEETVALFNCATHQLHRGLN
GSELRKVQVGSRPAPIDGFPLIGGTSVEGLWMLSGTYRDGLHMSPLLARHVVSLMDGGTGVDGLREFRPERDLISAWSRE
EILDDVVRHTMATGYEFPWRLPLEWPHMMETFLQGPFAELADRLSDTYTPPADLMTAIMFSEREQQDELIAYYADVHREW
H

The query sequence (length=481) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gri:F 482 481 0.9958 0.9938 0.9958 0.0 8gri:A, 8gri:B, 8gri:D, 8gri:C, 8gri:E, 8gri:G, 8gri:H, 7xqa:A, 7xqa:B, 7xqa:C, 7xqa:D, 7xqa:E, 7xqa:F, 7xqa:G, 7xqa:H, 7xx0:A, 7xx0:B, 7xx0:C, 7xx0:D, 7xx0:E, 7xx0:G, 7xx0:F, 7xx0:H, 7xxc:A, 7xxc:C, 7xxc:B, 7xxc:D, 7xxc:E, 7xxc:G, 7xxc:F, 7xxc:H, 7xxd:A, 7xxd:B, 7xxd:C, 7xxd:D, 7xxd:E, 7xxd:F, 7xxd:G, 7xxd:H, 7xxm:A, 7xxm:C, 7xxm:B, 7xxm:D, 7xxm:E, 7xxm:G, 7xxm:F, 7xxm:H, 7xxp:A, 7xxp:B, 7xxp:C, 7xxp:D, 7xxp:E, 7xxp:F, 7xxp:G, 7xxp:H, 7xxr:A, 7xxr:C, 7xxr:B, 7xxr:D, 7xxr:E, 7xxr:G, 7xxr:F, 7xxr:H, 7xye:A, 7xye:B, 7xye:C, 7xye:D, 7xye:E, 7xye:F, 7xye:G, 7xye:H, 7xyl:A, 7xyl:C, 7xyl:B, 7xyl:D, 7xyl:E, 7xyl:G, 7xyl:F, 7xyl:H, 7y0x:A, 7y0x:C, 7y0x:B, 7y0x:D, 7y0x:E, 7y0x:G, 7y0x:F, 7y0x:H
2 6j38:A 368 319 0.1975 0.2582 0.2978 9.07e-10 6j38:B, 6j39:A, 6j39:B
3 7cyx:A 363 386 0.1809 0.2397 0.2254 8.64e-07 7cyx:B
4 6pxs:A 370 235 0.1227 0.1595 0.2511 3.53e-04 6pxs:B, 6pxs:C, 6pxs:D
5 3jsk:A 292 49 0.0395 0.0651 0.3878 0.011 3jsk:B, 3jsk:C, 3jsk:D, 3jsk:E, 3jsk:F, 3jsk:G, 3jsk:H, 3jsk:I, 3jsk:J, 3jsk:K, 3jsk:L, 3jsk:M, 3jsk:N, 3jsk:O, 3jsk:P
6 4ysh:A 370 378 0.2287 0.2973 0.2910 0.026 4ysh:B
7 3fpz:A 311 49 0.0395 0.0611 0.3878 0.027 3fpz:B, 4y4l:A, 4y4l:B, 4y4l:C, 4y4l:D
8 3fg2:P 404 42 0.0478 0.0569 0.5476 0.073
9 3if9:A 364 194 0.0977 0.1291 0.2423 0.16 3if9:B, 3if9:C, 3if9:D, 1ng3:A, 1ng3:B, 1ng4:A, 1ng4:B, 1ryi:A, 1ryi:B, 1ryi:C, 1ryi:D
10 1rp0:A 278 49 0.0416 0.0719 0.4082 0.48 1rp0:B
11 6gg2:A 494 102 0.0603 0.0587 0.2843 1.1
12 2aiq:A 231 94 0.0457 0.0952 0.2340 2.3
13 2uzz:B 372 80 0.0478 0.0618 0.2875 2.3 2uzz:A, 2uzz:C, 2uzz:D
14 2gb0:B 389 80 0.0478 0.0591 0.2875 3.2 2a89:A, 2a89:B, 3bhf:A, 3bhf:B, 3bhk:A, 3bhk:B, 1el5:A, 1el5:B, 1el7:A, 1el7:B, 1el8:A, 1el8:B, 1el9:A, 1el9:B, 1eli:A, 1eli:B, 2gb0:A, 2gf3:A, 2gf3:B, 1l9c:A, 1l9c:B, 1l9d:A, 1l9d:B, 1l9e:A, 1l9e:B, 3m0o:A, 3m0o:B, 3m12:A, 3m12:B, 3m13:A, 3m13:B, 3m13:C, 3m13:D, 3qse:A, 3qse:B, 3qsm:A, 3qsm:B, 3qss:A, 3qss:B
15 4rl6:A 414 104 0.0561 0.0652 0.2596 5.1 4rl6:B
16 7fgp:A 379 235 0.1185 0.1504 0.2426 5.4 7fgp:B
17 3n9t:A 286 43 0.0333 0.0559 0.3721 6.1
18 6c95:B 160 79 0.0457 0.1375 0.2785 6.6 6ppl:C, 6pw9:C
19 2qe6:A 266 160 0.0894 0.1617 0.2687 8.6 2qe6:B
20 4rpg:A 393 77 0.0437 0.0534 0.2727 9.5 4rpg:B, 4rpg:C, 4rph:B, 4rph:A, 4rph:C, 4rpj:A, 4rpj:B, 4rpj:C, 4rpk:B, 4rpk:A, 4rpk:C, 4rpl:B, 4rpl:A, 4rpl:C, 1v0j:A, 1v0j:B, 1v0j:C, 1v0j:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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