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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDSVINKVTEKSRQKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESRAI
KIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPA
PLLKNVQLSESKARELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKDCANVNDF
FMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHVDEEVFKRAYIPRKNYERDMDIIMKLKE
KKERKKMVKEAQREKRKNKIPKHVKKRKE

The query sequence (length=349) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6zxf:z 373 376 0.9857 0.9223 0.9149 0.0 6zxg:z, 6zxh:z
2 6zxd:z 292 320 0.7794 0.9315 0.8500 0.0 4otp:A, 6zv6:h, 6zxe:z
3 4jin:A 254 229 0.2607 0.3583 0.3974 4.92e-49 3re4:A, 3re4:B, 1zp9:A, 1zp9:B, 1zp9:C, 1zp9:D, 1ztf:A, 1zth:A, 1zth:B, 1zth:C, 1zth:D
4 4gyi:A 339 205 0.1490 0.1534 0.2537 8.16e-10
5 6g18:v 325 204 0.1289 0.1385 0.2206 8.00e-09 6fdm:A, 6fdm:C, 6g51:v, 6hk6:A, 6hk6:B, 6hk6:I, 6hk6:C, 6hk6:D, 6hk6:E, 6hk6:F, 6hk6:G, 6hk6:H, 6hk6:J, 7vbt:A, 7vbt:B, 7wu0:v
6 8cbj:l 286 208 0.1375 0.1678 0.2308 1.95e-08 6eml:r, 6fai:l, 6rbd:l, 6y7c:l
7 1zao:A 271 51 0.0602 0.0775 0.4118 3.56e-05 1tqm:A, 1tqp:A, 1zar:A
8 8c01:r 239 127 0.0860 0.1255 0.2362 0.004 8c00:r
9 2w98:B 355 87 0.0716 0.0704 0.2874 0.40 2vna:A, 2w4q:A, 2w98:A, 2zb4:A, 2zb7:A, 2zb8:A
10 6ifr:A 694 48 0.0516 0.0259 0.3750 1.3 6ifl:A
11 5a9z:BL 138 44 0.0401 0.1014 0.3182 1.3 5aa0:BL, 4aqy:H, 7azo:S8A, 7azo:S8B, 7azs:S8A, 7azs:S8B, 9b00:1h, 9b00:2h, 4b3m:H, 4b3r:H, 4b3s:H, 4b3t:H, 6b4v:QA, 6b4v:UC, 6boh:RA, 6boh:WC, 6bok:PA, 6bok:SC, 5br8:H, 6buw:QH, 6buw:XH, 6bz6:QH, 6bz6:XH, 6bz7:QH, 6bz7:XH, 6bz8:QH, 6bz8:XH, 6c5l:AH, 6c5l:CH, 6cae:1h, 6cae:2h, 6cao:H, 6cap:H, 6caq:H, 6car:H, 6cas:H, 6cfj:1h, 6cfj:2h, 6cfk:1h, 6cfk:2h, 6cfl:1h, 6cfl:2h, 8cvj:1h, 8cvj:2h, 8cvk:1h, 8cvk:2h, 8cvl:1h, 8cvl:2h, 5czp:XH, 5czp:QH, 6czr:1h, 6czr:2h, 5d8b:IA, 5d8b:EC, 5dfe:XH, 5dfe:QH, 5dox:1h, 5dox:2h, 5doy:1h, 5doy:2h, 4dr1:H, 4dr2:H, 4dr3:H, 4dr4:H, 4dr5:H, 4dr6:H, 4dr7:H, 6dti:H, 4duy:H, 4duz:H, 7dug:H, 7duh:H, 7dui:H, 7duj:H, 7duk:H, 7dul:H, 4dv0:H, 4dv1:H, 4dv2:H, 4dv3:H, 4dv4:H, 4dv5:H, 4dv6:H, 4dv7:H, 2e5l:H, 5e7k:7E, 5e7k:72, 5e81:7E, 5e81:72, 8ekb:1h, 8ekb:2h, 5el4:7E, 5el4:72, 5el5:7E, 5el5:72, 5el6:7E, 5el6:72, 5el7:7E, 5el7:72, 8ev6:1h, 8ev6:2h, 8ev7:1h, 8ev7:2h, 2f4v:H, 5f8k:1h, 5f8k:2h, 8fc1:1h, 8fc1:2h, 8fc2:1h, 8fc2:2h, 8fc3:1h, 8fc3:2h, 8fc4:1h, 8fc4:2h, 8fc5:1h, 8fc5:2h, 8fc6:1h, 8fc6:2h, 5fdu:1h, 5fdu:2h, 5fdv:1h, 5fdv:2h, 1fjg:H, 1fka:H, 6fkr:1h, 6fkr:2h, 8fom:QH, 8fom:XH, 8fon:QH, 8fon:XH, 8g29:1h, 8g29:2h, 8g2a:1h, 8g2a:2h, 8g2b:1h, 8g2b:2h, 8g2c:1h, 8g2c:2h, 8g2d:1h, 8g2d:2h, 4gkj:H, 4gkk:H, 6gsj:7E, 6gsj:72, 6gsk:7E, 6gsk:72, 6gsl:7E, 6gsl:72, 6gzq:H2, 6gzx:H3, 6gzx:H4, 6gzz:H3, 6gzz:H4, 5hau:1h, 5hau:2h, 5hcp:1h, 5hcp:2h, 5hcq:1h, 5hcq:2h, 5hcr:1h, 5hcr:2h, 5hd1:1h, 5hd1:2h, 2hhh:H, 1hnw:H, 1hnx:H, 1hnz:H, 1hr0:H, 1i94:H, 1i97:H, 1ibk:H, 1ibl:H, 1ibm:H, 5ib7:7E, 5ib7:72, 5ib8:7E, 5ib8:72, 5ibb:7E, 5ibb:72, 5imq:L, 5imr:L, 5iwa:H, 5j30:QH, 5j30:XH, 5j3c:QH, 5j3c:XH, 5j4b:1h, 5j4b:2h, 5j4c:1h, 5j4c:2h, 5j4d:QA, 5j4d:VC, 1j5e:H, 5j8b:h, 4ji0:H, 4ji1:H, 4ji2:H, 4ji3:H, 4ji4:H, 4ji5:H, 4ji6:H, 4ji7:H, 4ji8:H, 7jql:1h, 7jql:2h, 7jqm:1h, 7jqm:2h, 4jv5:H, 4jya:H, 4k0k:H, 4khp:H, 4kvb:H, 4l47:QH, 4l47:XH, 4l71:QH, 4l71:XH, 4lel:QH, 4lel:XH, 4lf4:H, 4lf5:H, 4lf6:H, 4lf7:H, 4lf8:H, 4lf9:H, 4lfa:H, 4lfb:H, 4lfc:H, 4lfz:QH, 4lfz:XH, 7lh5:AH, 7lh5:CH, 5lmn:H, 5lmo:H, 5lmp:H, 5lmq:H, 5lmr:H, 5lms:H, 5lmt:H, 5lmu:H, 5lmv:H, 4lnt:QH, 4lnt:XH, 4lsk:QH, 4lsk:XH, 4lt8:QH, 4lt8:XH, 7md7:1h, 7md7:2h, 6mkn:H, 6mpf:H, 6mpi:H, 6n1d:AS08, 6n1d:BS08, 1n32:H, 1n33:H, 1n34:H, 1n36:H, 6n9e:1h, 6n9e:2h, 6n9f:1h, 6n9f:2h, 5ndj:7E, 5ndj:72, 5ndk:7E, 5ndk:72, 6nd5:1h, 6nd5:2h, 6nd6:1h, 6nd6:2h, 6ndk:QH, 6ndk:XH, 6nsh:QH, 6nsh:XH, 6nta:QH, 6nta:XH, 6nuo:QH, 6nuo:XH, 6nwy:QH, 6nwy:XH, 4nxm:H, 4nxn:H, 6ny6:H, 6o3m:QH, 6o3m:XH, 6o97:1h, 6o97:2h, 6of1:1h, 6of1:2h, 6of6:QH, 6of6:XH, 6oj2:QH, 6oj2:XH, 6ope:QH, 6ope:XH, 6ord:QH, 6ord:XH, 6osi:QH, 6osi:XH, 3oto:H, 5ot7:G, 6otr:QH, 6otr:XH, 4ox9:H, 6oxa:QH, 6oxa:XH, 6oxi:QH, 6oxi:XH, 4p6f:QH, 4p6f:XH, 4p70:QH, 4p70:XH, 6q95:m, 6qnq:7E, 6qnq:72, 6qnr:7E, 6qnr:72, 7rq8:1h, 7rq8:2h, 7rq9:1h, 7rq9:2h, 7rqa:1h, 7rqa:2h, 7rqb:1h, 7rqb:2h, 7rqc:1h, 7rqc:2h, 7rqd:1h, 7rqd:2h, 7rqe:1h, 7rqe:2h, 3t1h:H, 3t1y:H, 8t8b:1h, 8t8b:2h, 8t8c:1h, 8t8c:2h, 4tua:QH, 4tua:XH, 4tub:QH, 4tub:XH, 4tuc:QH, 4tuc:XH, 4tud:QH, 4tud:XH, 4tue:QH, 4tue:XH, 7u2h:1h, 7u2h:2h, 7u2i:1h, 7u2i:2h, 7u2j:1h, 7u2j:2h, 6ucq:1h, 6ucq:2h, 8ud6:1h, 8ud6:2h, 8ud7:1h, 8ud7:2h, 8ud8:1h, 8ud8:2h, 6uo1:1h, 6uo1:2h, 5uq7:h, 5uq8:h, 2uu9:H, 2uua:H, 2uub:H, 2uuc:H, 8uvr:1h, 8uvr:2h, 8uvs:1h, 8uvs:2h, 2uxb:H, 2uxc:H, 2uxd:H, 7v2l:H, 7v2m:H, 7v2n:H, 7v2o:H, 7v2p:H, 7v2q:H, 4v49:AH, 4v4a:AH, 4v4g:AH, 4v4g:CH, 4v4g:EH, 4v4g:GH, 4v4g:IH, 4v4i:i, 4v4j:i, 4v4p:BK, 4v4r:AH, 4v4s:AH, 4v4t:AH, 4v4x:AK, 4v4y:AK, 4v4z:AK, 4v51:AH, 4v51:CH, 4v5a:AH, 4v5a:CH, 4v5c:AH, 4v5c:CH, 4v5d:AH, 4v5d:CH, 4v5e:AH, 4v5e:CH, 4v5f:AH, 4v5f:CH, 4v5g:AH, 4v5g:CH, 4v5j:AH, 4v5j:CH, 4v5k:AH, 4v5k:CH, 4v5l:AH, 4v5m:AH, 4v5n:AH, 4v5p:AH, 4v5p:CH, 4v5q:AH, 4v5q:CH, 4v5r:AH, 4v5r:CH, 4v5s:AH, 4v5s:CH, 4v63:AH, 4v63:CH, 4v67:AH, 4v67:CH, 4v68:AH, 4v6a:AH, 4v6a:CH, 4v6f:BK, 4v6f:CK, 4v6g:AK, 4v6g:CK, 4v7j:Ah, 4v7j:Bh, 4v7k:Ah, 4v7k:Bh, 4v7l:AH, 4v7l:CH, 4v7m:AH, 4v7m:CH, 4v7p:AH, 4v7p:DH, 4v7w:AH, 4v7w:CH, 4v7x:AH, 4v7x:CH, 4v7y:AH, 4v7y:CH, 4v7z:AH, 4v7z:CH, 4v83:AH, 4v83:CH, 4v84:AH, 4v84:CH, 4v87:BK, 4v87:CK, 4v8a:CH, 4v8a:DH, 4v8b:AK, 4v8b:CK, 4v8c:CK, 4v8c:DK, 4v8d:AK, 4v8d:CK, 4v8e:BK, 4v8e:DK, 4v8f:BK, 4v8f:CK, 4v8g:AH, 4v8g:CH, 4v8h:AH, 4v8h:CH, 4v8i:AH, 4v8i:CH, 4v8j:AH, 4v8j:CH, 4v8n:AH, 4v8n:CH, 4v8o:AH, 4v8q:BH, 4v8u:AH, 4v8u:CH, 4v8x:AH, 4v8x:CH, 5v8i:1h, 5v8i:2h, 4v90:AH, 4v95:AH, 4v95:CH, 4v97:AH, 4v97:CH, 4v9a:AK, 4v9a:CK, 4v9b:AK, 4v9b:CK, 4v9h:AH, 4v9i:AH, 4v9i:CH, 4v9j:AH, 4v9j:CH, 4v9k:AH, 4v9k:CH, 4v9l:AH, 4v9l:CH, 4v9m:AH, 4v9m:CH, 4v9n:AH, 4v9n:CH, 4v9q:BH, 4v9q:DH, 4v9r:AH, 4v9r:CH, 4v9s:AH, 4v9s:CH, 5vp2:1h, 5vp2:2h, 5vpo:QH, 5vpo:XH, 5vpp:QH, 5vpp:XH, 2vqe:H, 2vqf:H, 8vtu:1h, 8vtu:2h, 8vtv:1h, 8vtv:2h, 8vtw:1h, 8vtw:2h, 8vtx:1h, 8vtx:2h, 8vty:1h, 8vty:2h, 1vvj:QH, 1vvj:XH, 1vy4:AH, 1vy4:CH, 1vy5:AH, 1vy5:CH, 1vy6:AH, 1vy6:CH, 1vy7:AH, 1vy7:CH, 4w29:AH, 4w29:CH, 4w2e:h, 4w2f:AH, 4w2f:CH, 4w2g:AH, 4w2g:CH, 4w2h:AH, 4w2h:CH, 4w2i:AH, 4w2i:CH, 4w4g:QH, 4w4g:XH, 5w4k:1h, 5w4k:2h, 5wis:1h, 5wis:2h, 5wit:1h, 5wit:2h, 5wnp:H, 5wnq:H, 5wnr:H, 5wns:H, 5wnt:H, 5wnu:H, 5wnv:H, 4wpo:BH, 4wpo:DH, 4wq1:7E, 4wq1:72, 4wqf:BH, 4wqf:DH, 4wqr:7E, 4wqr:72, 4wqu:BH, 4wqu:DH, 4wqy:BH, 4wqy:DH, 4wr6:7E, 4wr6:72, 4wra:7E, 4wra:72, 4wro:7E, 4wsd:7E, 4wsd:72, 4wsm:7E, 4wsm:72, 4wt1:7E, 4wt1:72, 4wt8:AH, 4wt8:BH, 4wu1:7E, 4wu1:72, 4wzd:7E, 4wzd:72, 4wzo:7E, 4wzo:72, 4x62:H, 4x64:H, 4x65:H, 4x66:H, 4xej:AS08, 4xej:BS08, 6xhv:1h, 6xhv:2h, 6xhw:1h, 6xhw:2h, 6xhx:1h, 6xhx:2h, 6xhy:1h, 6xhy:2h, 1xmo:H, 1xmq:H, 1xnq:H, 1xnr:H, 6xqd:1h, 6xqd:2h, 6xqe:1h, 6xqe:2h, 4y4o:1h, 4y4o:2h, 4y4p:1h, 4y4p:2h, 4yhh:H, 4ypb:QH, 4ypb:XH, 4yy3:H, 4yzv:QH, 4yzv:XH, 4z3s:1h, 4z3s:2h, 4z8c:1h, 4z8c:2h, 4zer:1h, 4zer:2h, 5zlu:N, 2zm6:H, 4zsn:QH, 4zsn:XH
12 7suk:LV 362 44 0.0458 0.0442 0.3636 2.2 7ajt:JC, 7d63:RA, 6ke6:RA, 6lqp:RA, 6lqq:RA, 6lqr:RA, 6lqu:RA, 6lqv:RA, 5wlc:LV, 6zqb:JC, 6zqc:JC
13 2mf8:A 75 21 0.0258 0.1200 0.4286 2.4 2jx1:A
14 7ofx:B 665 42 0.0372 0.0195 0.3095 3.2 7ofx:A, 7ofx:C, 7ofx:D, 5ohs:A, 5ohs:B, 5ohs:C, 5ohs:D, 5ohs:E, 5ohs:F, 5ohs:G, 5ohs:H, 5ohy:A, 5ohy:B, 5ohy:C, 5ohy:D
15 6zwm:B 2185 61 0.0573 0.0092 0.3279 3.7 6zwm:A
16 3dhi:A 498 106 0.0802 0.0562 0.2642 4.3 3dhg:A, 3dhg:D, 3dhh:A, 3ge3:A, 3ge8:A, 3ge8:D, 3i5j:A, 3i63:A, 4p1b:A, 4p1b:D, 4p1c:A, 4p1c:D, 3q14:A, 3q2a:A, 3q3m:A, 3q3m:D, 3q3n:A, 3q3o:A, 3ri7:A, 3rmk:A, 3rmk:D, 5tds:A, 5tds:D, 5tdt:A, 5tdt:D, 5tdu:A, 5tdv:A, 5tdv:D
17 6ifu:A 706 38 0.0487 0.0241 0.4474 5.8
18 7jil:N 125 32 0.0315 0.0880 0.3438 7.7
19 1gl9:B 1020 87 0.0630 0.0216 0.2529 9.1 1gl9:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218