Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDSPVLALAKELISRQSVTPADAGCQDLMIERLKALGFEIESMVFEDTTNFWARRGTQSPLFVFAGHTDVVPAGPLSQWH
TPPFEPTVIDGFLHGRGAADMKGSLACMIVAVERFIAEHPDHQGSIGFLITSDEEGPNGTVRVVETLMARNELIDMCIVG
EPSSTLAVGDVVKNGRRGGGFLTDTGELLAAVVAAVEEVNHQAPALLTTGGTSDGRFIAQMGAQVVELGPVNATIHKVNE
CVRIADLEKLTDMYQKTLNHLLG

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4op4:B 265 265 1.0000 0.9925 0.9925 0.0 4op4:A
2 4h2k:A 258 260 0.5703 0.5814 0.5769 2.69e-104 4h2k:B
3 4o23:A 376 213 0.4639 0.3245 0.5728 4.35e-78 4o23:B, 4ppz:A, 4pqa:A, 5uej:A, 5uej:B
4 4o23:A 376 85 0.1559 0.1090 0.4824 1.02e-16 4o23:B, 4ppz:A, 4pqa:A, 5uej:A, 5uej:B
5 7lgp:B 377 177 0.4411 0.3077 0.6554 4.73e-78 7lgp:A
6 7lgp:B 377 86 0.2167 0.1512 0.6628 1.56e-29 7lgp:A
7 5vo3:A 380 176 0.4030 0.2789 0.6023 1.51e-73 3ic1:A, 3ic1:B, 3isz:A, 3isz:B
8 5vo3:A 380 85 0.1825 0.1263 0.5647 1.26e-22 3ic1:A, 3ic1:B, 3isz:A, 3isz:B
9 7t1q:A 377 164 0.3992 0.2785 0.6402 4.96e-72 8f8o:A, 8f8o:B, 7t1q:B
10 7t1q:A 377 82 0.1711 0.1194 0.5488 2.34e-19 8f8o:A, 8f8o:B, 7t1q:B
11 3pfo:A 426 104 0.1559 0.0962 0.3942 1.48e-14 3pfo:B
12 2pok:A 458 135 0.1559 0.0895 0.3037 4.11e-10 2pok:B
13 7uoi:A 383 162 0.1749 0.1201 0.2840 5.02e-09 8vkt:A
14 8uw6:B 381 172 0.2015 0.1391 0.3081 1.03e-08 7rsf:A, 7rsf:B, 8uw6:A, 8uw6:C, 8uw6:D
15 3dlj:A 471 73 0.1217 0.0679 0.4384 3.52e-08 3dlj:B
16 4mmo:A 437 55 0.0684 0.0412 0.3273 1.65e-06
17 3ki9:A 467 69 0.0951 0.0535 0.3623 1.08e-04
18 2zof:A 478 58 0.0798 0.0439 0.3621 7.27e-04 4ruh:A, 4ruh:B, 2zof:B, 2zog:A, 2zog:B
19 4g1p:A 479 55 0.0913 0.0501 0.4364 0.010
20 1q7l:A 192 71 0.0951 0.1302 0.3521 0.014 1q7l:C
21 1lfw:A 468 63 0.0989 0.0556 0.4127 0.022
22 3rza:A 373 141 0.1483 0.1046 0.2766 0.12 3rza:B
23 3pfe:A 471 108 0.0989 0.0552 0.2407 0.61
24 3nev:A 298 127 0.1179 0.1040 0.2441 0.69 3nev:B, 3nev:C, 3nev:D, 4oe7:A, 4oe7:B, 4oe7:C, 4oe7:D, 4onv:A, 4onv:B, 4onv:C, 4onv:D, 4ptn:A, 4ptn:B, 4ptn:C, 4ptn:D, 4u4m:A, 4u4m:B, 4u4m:C, 4u4m:D
25 2b5w:A 357 81 0.0798 0.0588 0.2593 2.0 2b5v:A, 2vwg:A, 2vwh:A, 2vwp:A, 2vwq:A
26 6wje:A 126 62 0.0722 0.1508 0.3065 2.7 6wis:A, 6wis:B, 6wje:B, 6wje:C, 6wje:D, 6wje:E, 6wje:F
27 3qdk:A 546 69 0.0760 0.0366 0.2899 2.9
28 2glf:A 450 52 0.0570 0.0333 0.2885 3.0 2glf:B, 2glf:C, 2glf:D
29 7a5f:E6 122 60 0.0722 0.1557 0.3167 3.2 7a5g:E6, 7a5i:E6, 7a5k:E6, 8any:AE, 8csp:E, 8csq:E, 8csr:E, 8css:E, 8cst:E, 8csu:E, 3j9m:AE, 8k2a:SF, 7l08:AE, 6nu2:AE, 6nu3:AE, 7og4:AE, 8oir:AE, 8ois:AE, 7p2e:E, 7pnx:E, 7pny:E, 7pnz:E, 7po0:E, 7po1:E, 7po2:E, 7po3:E, 7qi4:AE, 7qi5:AE, 7qi6:AE, 8qrk:E, 8qrl:E, 8qrm:E, 8qrn:E, 6rw4:E, 6rw5:E, 6vlz:AE, 6vmi:AE, 8xt0:SF, 8xt2:SF, 6zm5:AE, 6zm6:AE, 6zs9:AE, 6zsa:AE, 6zsb:AE, 6zsc:AE, 6zsd:AE, 6zse:AE, 6zsg:AE
30 7dva:A 523 30 0.0570 0.0287 0.5000 3.4 7dva:B, 7dvb:A, 7dvb:B, 7dvb:C, 7dvb:D
31 8eg0:B 353 81 0.0913 0.0680 0.2963 5.4 8cth:B, 8cti:B, 8d9k:B, 8d9l:B
32 6peu:B 385 71 0.0722 0.0494 0.2676 7.8 6pe3:A, 6peu:A, 6peu:C, 6peu:D
33 1yvk:A 152 102 0.0951 0.1645 0.2451 9.5 1yvk:B, 1yvk:C, 1yvk:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218