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BioLiP
>protein
TDNAVMEQRVDALFVLTKELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGVAASESLGFSFPKAA
KHFVVLENTPELHNVICCSLCSCTAFTIIGMAPDWYKELEYRARIVRQARTVLKEIGLDLPESIDIRVWDTTADTRYMVL
PLRPQGTEDWSEAQLATLITQDCLIGVSRLEAPFAALPAPAVALGA

The query sequence (length=206) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fm4:A 206 206 0.9903 0.9903 0.9903 6.61e-152 4fm4:C, 4fm4:E, 4fm4:G, 4fm4:I, 4fm4:K, 4fm4:M, 4fm4:O, 4zgd:A, 4zgd:C, 4zgd:E, 4zgd:G, 4zgd:I, 4zgd:K, 4zgd:M, 4zgd:O, 4zge:A, 4zge:C, 4zge:E, 4zge:G, 4zge:I, 4zge:K, 4zge:M, 4zge:O, 4zgj:A, 4zgj:C, 4zgj:E, 4zgj:G, 4zgj:I, 4zgj:K, 4zgj:M, 4zgj:O
2 1ahj:A 198 191 0.4660 0.4848 0.5026 2.18e-64 3a8g:A, 3a8h:A, 3a8l:A, 3a8m:A, 3a8o:A, 1ahj:C, 1ahj:E, 1ahj:G, 2ahj:A, 2ahj:C, 2cyz:A, 2cz0:A, 2cz1:A, 2cz6:A, 2cz7:A, 2d0q:A, 2qdy:A, 3wvd:A, 3wve:A, 3x20:A, 3x24:A, 3x25:A, 3x26:A, 3x28:A, 2zcf:A, 2zpb:A, 2zpe:A, 2zpf:A, 2zpg:A, 2zph:A, 2zpi:A
3 3qxe:A 201 184 0.4612 0.4726 0.5163 3.71e-57 3qxe:C, 3qxe:E, 3qxe:G, 3qyg:A, 3qyg:C, 3qyg:E, 3qyg:G, 3qyh:A, 3qyh:C, 3qyh:E, 3qyh:G, 3qz5:A, 3qz5:C, 3qz5:E, 3qz5:G, 3qz9:A, 3qz9:C, 3qz9:E, 3qz9:G
4 1v29:A 203 187 0.4126 0.4187 0.4545 3.44e-53 2dpp:A, 3hht:A, 7qom:A, 7qop:A, 7qou:A, 7qov:A, 7qoy:A, 7z0v:A
5 4ob3:A 204 196 0.3981 0.4020 0.4184 2.71e-51 9d6k:A, 8i6n:A, 1ire:A, 4ob0:A, 4ob1:A, 4ob2:A, 1ugp:A, 1ugr:A, 1ugs:A, 3vyh:A, 7w8l:A, 7w8m:A
6 2zzd:F 218 216 0.4078 0.3853 0.3889 3.98e-47 2dd5:C, 2dd5:F, 2dd5:I, 2dd5:L, 2dxb:C, 2dxb:F, 2dxb:I, 2dxb:L, 2dxb:O, 2dxb:R, 2dxb:U, 2dxb:X, 2dxc:C, 2dxc:F, 2dxc:I, 2dxc:L, 3vyg:C, 3vyg:F, 3vyg:I, 3vyg:L, 2zzd:C, 2zzd:I, 2zzd:L
7 7drc:C 906 49 0.0825 0.0188 0.3469 4.4 7drb:C, 7drb:D, 7w3v:C, 7w3x:C
8 8brh:A 632 91 0.1165 0.0380 0.2637 4.4
9 3f6h:B 125 64 0.0728 0.1200 0.2344 4.6 3f6g:B, 3f6g:A, 3f6h:A
10 7cte:D 406 103 0.1359 0.0690 0.2718 5.7 7ctf:D, 7ctg:D, 7jpo:D, 7jpp:D, 7jpq:D, 7jpr:D, 7jps:D, 5uj7:C, 5uj7:D, 5ujm:D
11 7lu4:B 977 24 0.0631 0.0133 0.5417 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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