Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDLRRVDEVARSGGGRALVCRIAEHVQLDPDLMSELKKVGVVPGNEIDIVAVAGVNKPIQVQGSEGGTQLQPGIAHAVMV
RV

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7b20:B 228 82 1.0000 0.3596 1.0000 1.18e-52 7b1v:A, 7b1v:B, 7b1y:A, 7b1y:B, 7b1y:C, 7b1y:D, 7b1y:dd, 7b1y:aa, 7b20:A, 7b20:C, 7b20:D, 7b20:dd, 7b20:aa, 7b23:A, 7b23:B, 7b23:C, 7b23:D, 7b23:dd, 7b23:aa, 7b24:A, 7b24:B, 7b24:C, 7b24:D, 7b24:dd, 7b24:aa, 7b25:A, 7b25:B, 7b25:C, 7b25:D, 7b25:dd, 7b25:aa
2 1fx7:A 230 79 0.3415 0.1217 0.3544 4.57e-04 1b1b:A, 1fx7:B, 1fx7:C, 1fx7:D, 2isz:A, 2isz:B, 2isz:C, 2isz:D, 2it0:A, 2it0:B, 2it0:C, 2it0:D, 1u8r:A, 1u8r:B, 1u8r:C, 1u8r:D, 1u8r:G, 1u8r:H, 1u8r:I, 1u8r:J
3 5fl7:D 470 37 0.1341 0.0234 0.2973 0.13 5fl7:F
4 3iuy:A 213 75 0.2439 0.0939 0.2667 0.50 3iuy:B
5 2y64:A 167 54 0.1707 0.0838 0.2593 0.62 4bj0:A, 5dpn:A, 3jxs:A, 3jxs:B, 3jxs:C, 2y6g:A, 2y6h:A, 2y6j:A, 2y6k:A, 2y6l:A
6 6ai0:B 335 78 0.2317 0.0567 0.2436 0.83 6ai0:A
7 4ii9:A 337 57 0.2439 0.0593 0.3509 1.0 3gkr:A, 1ne9:A, 1p4n:A, 1xe4:A, 1xf8:A, 7z5y:A, 7z5z:A, 7z6a:A, 7z6k:A
8 4tlm:D 753 46 0.2195 0.0239 0.3913 1.1
9 4tll:D 757 46 0.2195 0.0238 0.3913 1.1 4tll:B, 4tlm:B, 5un1:B
10 5iov:B 798 46 0.2195 0.0226 0.3913 1.1 5iou:B, 5iou:D, 5iov:D, 5un1:D, 5un1:H
11 8pv1:CI 152 34 0.1463 0.0789 0.3529 3.3 8i9p:CI, 8i9r:CI, 8i9t:CI, 8i9v:CI, 8i9w:CI, 8i9x:CI, 8i9y:CI, 8i9z:CI, 8ia0:CI, 8pv3:CI, 8pv4:CI, 8pv7:CI, 8pvk:CI
12 8f29:D 473 37 0.1220 0.0211 0.2703 3.3 4b2q:D, 4b2q:F, 4b2q:d, 4b2q:f, 6b8h:D, 6b8h:F, 6b8h:Y, 6b8h:c, 6cp3:D, 6cp3:F, 6cp6:D, 6cp6:F, 8f29:F, 8f2k:E, 8f2k:F, 8f39:E, 8f39:F, 8fl8:E, 8fl8:F, 2hld:D, 2hld:F, 2hld:M, 2hld:N, 2hld:O, 2hld:V, 2hld:X, 5lqx:D, 5lqx:E, 5lqx:F, 5lqy:D, 5lqy:E, 5lqy:F, 5lqz:D, 5lqz:E, 5lqz:F, 7md2:D, 7md3:D, 3oe7:D, 3oe7:F, 3oe7:M, 3oe7:N, 3oe7:O, 3oe7:V, 3oe7:X, 3oee:D, 3oee:F, 3oee:M, 3oee:O, 3oee:V, 3oee:X, 3oeh:D, 3oeh:F, 3oeh:M, 3oeh:O, 3oeh:V, 3oeh:X, 3ofn:D, 3ofn:F, 3ofn:M, 3ofn:O, 3ofn:V, 3ofn:X, 7tjs:D, 7tju:D, 7tju:E, 7tjv:D, 7tjv:F, 7tjw:D, 7tjw:F, 7tjx:D, 7tjx:F, 2wpd:D, 2wpd:F, 2xok:D, 2xok:F, 3zia:D, 3zia:E, 3zia:F, 3zia:N, 3zia:O, 3zia:P, 3zry:D, 3zry:F
13 6u7k:A 1064 76 0.2683 0.0207 0.2895 5.1
14 6vv5:A 1097 74 0.2805 0.0210 0.3108 5.5 6vv5:B, 6vv5:C
15 7y6t:C 1098 74 0.2805 0.0209 0.3108 5.5
16 7y6t:A 1124 74 0.2805 0.0205 0.3108 5.5
17 7w6m:A 1224 74 0.2805 0.0188 0.3108 5.5 7w6m:C, 7w6m:B, 7w73:C, 7w73:A, 7y6t:B, 7y6u:A
18 6wnn:A 420 40 0.2073 0.0405 0.4250 5.6 3dod:A, 3dod:B, 6wnn:B
19 3du4:A 448 40 0.2073 0.0379 0.4250 5.7 3du4:B
20 3nx3:A 388 34 0.1585 0.0335 0.3824 6.7
21 2nvu:B 789 32 0.1707 0.0177 0.4375 6.8 3dbh:B, 3dbh:D, 3dbh:F, 3dbh:H, 3dbl:B, 3dbl:D, 3dbl:F, 3dbl:H, 3dbr:B, 3dbr:D, 3dbr:F, 3dbr:H, 3gzn:B, 3gzn:D, 1r4m:F, 1r4m:H, 1r4n:B, 1r4n:D, 1r4n:F, 1r4n:H, 1tt5:B, 1tt5:D, 1yov:B, 1yov:D
22 2vvm:A 481 35 0.1829 0.0312 0.4286 6.8 2vvl:A, 2vvl:B, 2vvl:C, 2vvl:D, 2vvl:E, 2vvl:F, 2vvl:G, 2vvl:H, 2vvm:B, 3zdn:A, 3zdn:B, 3zdn:C, 3zdn:D
23 6ayo:A 229 48 0.1951 0.0699 0.3333 7.5 6ayo:B, 6ayq:A, 6ayq:B, 6ayr:A, 6ayr:B, 6ayr:C, 6ayr:D, 6ays:A, 6ays:B, 6ays:C, 6ays:G, 6ays:D, 6ays:H, 6ays:E, 6ays:F, 6ayt:A, 6ayt:B, 6ayt:C, 6ayt:D
24 5i4m:A 414 43 0.1951 0.0386 0.3721 7.9 5i4m:B, 5thw:A, 5thw:B, 5thw:C, 5thw:D
25 7jwp:B 216 58 0.1951 0.0741 0.2759 7.9 7jwp:D, 7jwp:F, 7jwp:H, 7jwp:J, 7jwp:L, 7jwp:N, 7jwp:P, 7jwq:B, 7jwq:D
26 5myj:AI 129 17 0.0976 0.0620 0.4706 9.5

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218