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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TDLKASSLRALKLMDLSTDYTDEKVIALCHQAKTPGNTAAISIYPRSIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEI
ALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIESGELKDEALIRKASEISIKAGADF
IKTSTGLVAVNATPESARIMMEVIRDMGVEKSVGFKVTGGARTAEDAQKYLAIADELFGADWADARHYRFGASGLLASLL
KALGHG

The query sequence (length=246) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jcj:A 252 250 0.9472 0.9246 0.9320 2.76e-148 5eky:A, 5el1:A, 5emu:A, 8for:A, 8for:B, 8for:C, 8for:D, 8for:E, 8for:F, 1jcj:B, 1jcl:A, 1jcl:B, 7p76:A, 7p76:B, 7p76:C, 7p76:D, 7p76:E, 7p76:F, 7p76:G, 7p76:H, 7p76:I, 7p76:J, 7p76:K, 7p76:L, 3q2d:A, 3q2d:B, 6z9i:B
2 3ngj:D 222 196 0.2602 0.2883 0.3265 1.47e-19 3ngj:A, 3ngj:B, 3ngj:C
3 1ub3:A 211 149 0.2195 0.2559 0.3624 2.23e-14 1ub3:B, 1ub3:C, 1ub3:D
4 3qyq:A 273 209 0.2358 0.2125 0.2775 9.63e-14 3qyq:B
5 5lst:A 617 46 0.0650 0.0259 0.3478 0.54
6 8onj:A 277 63 0.0813 0.0722 0.3175 0.94 8ahr:A, 8ahr:B, 8aie:A, 8aie:B, 8ayj:A, 8ayj:B, 8ayk:A, 8ayk:B, 8onj:B, 8onl:A, 8onl:B, 8onm:A, 8onm:B, 8onn:A, 8onn:B, 8onn:C, 8onn:D
7 1rm6:A 761 55 0.0691 0.0223 0.3091 1.2 1rm6:D, 1sb3:A, 1sb3:D
8 2dfy:X 158 60 0.0772 0.1203 0.3167 3.7 2dfy:C, 1rut:X
9 3al0:C 564 98 0.1057 0.0461 0.2653 5.2 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
10 5ey5:A 261 70 0.0813 0.0766 0.2857 7.2 5ey5:C
11 6xfr:B 216 51 0.0610 0.0694 0.2941 9.0 6xfr:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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