Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TCLKNFFSVLLILVYLLLMGVAVFLVYQTITDFRDKLKHPVMSVSYKEVNMYDAPGIALYPGKARLLSCEHHWYDHIPPL
KDPGQPGENTCVTQDISYIDPYTNKTMKHALIVQGPRDVRRRELVFLQFHLNETKQDFSAIDYLLFSSYEAFLKSHDQVK
FMQDCESSFSSWKFSGGFRTWVKMSLVKTKEEDGSQSVEFRQETSVVNFIDRRETPDKGDQLFFVVFEWKDPYIQEIQDI
ITANPWSMIALLCSVFLVLFKAADFAKLSVKWMIKVRRRHLKKRA

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8h8e:D 293 285 1.0000 0.9727 1.0000 0.0 8h8e:B, 8h8e:C, 8h8e:E, 8h8e:F
2 8eq4:A 283 281 0.7298 0.7350 0.7402 7.27e-163 8eq4:B, 8eq4:C, 8fbl:A, 8fbl:B, 8fbl:C
3 1kyv:E 152 65 0.0667 0.1250 0.2923 0.073 2a57:A, 2a57:E, 2a57:B, 2a57:C, 2a57:D, 2a58:A, 2a58:B, 2a58:C, 2a58:D, 2a58:E, 2a59:A, 2a59:E, 2a59:B, 2a59:C, 2a59:D, 1kyv:A, 1kyv:B, 1kyv:C, 1kyv:D, 1kyx:A, 1kyx:E, 1kyx:B, 1kyx:C, 1kyx:D, 1kyy:A, 1kyy:E, 1kyy:B, 1kyy:C, 1kyy:D
4 5yly:B 269 68 0.0772 0.0818 0.3235 0.49 5yly:A
5 7rsn:L 101 41 0.0561 0.1584 0.3902 0.96 7rsn:J, 7rsn:K
6 7t4s:F 363 57 0.0737 0.0579 0.3684 3.3
7 2vvg:B 309 83 0.0667 0.0615 0.2289 3.4 2vvg:A
8 2ffw:A 78 20 0.0351 0.1282 0.5000 3.7
9 2qqo:A 431 57 0.0737 0.0487 0.3684 4.1 5dn2:C, 5dn2:D, 5dn2:A, 5dq0:A, 7m22:N, 2qqo:B, 6tdb:A, 6tdb:B, 6tdb:C, 6tdb:D, 6tjt:A, 6tjt:B
10 2jun:A 101 83 0.0842 0.2376 0.2892 4.1 2dq5:A
11 6lum:E 31 27 0.0351 0.3226 0.3704 5.9 6lum:I, 6lum:O

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218