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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TAYTPLDVAQAYQFPEGLDGQGQCIAIIELGGGYDEASLAQYFASLGVPAPQVVSVSVDGASNQPTGDPSGPDGEVELDI
EVAGALAPGAKFAVYFAPNTDAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIAAMNRAFLDAAALGVTVLAAAG
NSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASGGRIAQETVWNDGPDGGATGGGVSRIFPLPAWQEHANVPPSANPG
ASSGRGVPDLAGNADPATGYEVVIDGEATVIGGTSAVAPLFAALVARINQKLGKAVGYLNPTLYQLPADVFHDITEGNND
IANRAQIYQAGPGWDPCTGLGSPIGVRLLQALLP

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1t1e:A 534 354 0.9209 0.6105 0.9209 0.0 1gt9:1, 1gt9:2, 1gtg:1, 1gtj:1, 1gtj:2, 1gtl:1, 1gtl:2, 4ne7:A, 1sio:A, 1sio:B, 1sio:C, 1siu:A, 1sn7:A, 1t1g:A, 1t1i:A, 1zvj:A, 1zvk:A, 1zvk:B
2 3edy:A 544 302 0.2881 0.1875 0.3377 4.52e-29 3ee6:A, 3ee6:B
3 1ga1:A 370 309 0.2684 0.2568 0.3074 3.62e-23 1ga4:A, 1ga6:A, 6m8w:A, 6m8y:A, 6m9c:A, 6m9d:A, 6m9f:A, 1nlu:A
4 7y6m:C 290 75 0.0706 0.0862 0.3333 0.028 7y6m:D
5 1bh6:A 274 98 0.0904 0.1168 0.3265 0.045
6 4a2c:A 346 94 0.0791 0.0809 0.2979 0.73 4a2c:B, 4uej:A, 4uej:B, 4uek:A, 4uek:B, 4ueo:A, 4ueo:B
7 4zi8:B 323 37 0.0452 0.0495 0.4324 1.6 4zi8:A
8 3whi:A 355 68 0.0650 0.0648 0.3382 2.6 4dww:A, 5gl8:B, 1mee:A, 6o44:A, 6o44:B, 6pak:A, 6pak:B, 1scj:A, 3vyv:A, 3vyv:B, 3whi:B
9 8c4z:B 282 45 0.0508 0.0638 0.4000 2.9
10 3gnq:C 335 55 0.0508 0.0537 0.3273 3.5 3gnq:B, 3gnq:D, 3gnq:E, 3gnq:F, 3gnq:G, 3gnq:H
11 5c3q:B 311 100 0.0847 0.0965 0.3000 4.0 5c3o:A, 5c3p:D, 5c3q:C, 5c3r:B, 5c3r:C, 5c3s:B, 5c3s:C
12 5c3q:A 335 100 0.0847 0.0896 0.3000 4.4 5c3p:A, 5c3p:B, 5c3p:C, 5c3q:D, 5c3r:A, 5c3r:D, 5c3s:A, 5c3s:D
13 3wiv:C 397 109 0.0819 0.0730 0.2661 4.9 3a3n:A, 3a3n:B, 3a3o:A, 3a3o:B, 3a3p:A, 3a3p:B, 2e1p:A, 4jp8:A, 3vhq:A, 3vv2:A, 3vv2:B, 3wiu:A, 3wiu:B, 3wiu:C, 3wiv:A, 3wiv:B, 2z2x:A, 2z2y:A, 2z2y:B, 2z2y:C, 2z2y:D, 2z2z:A, 2z30:A, 2z30:B, 2z56:A, 2z56:B, 2z57:A, 2z57:B, 2z58:A, 2z58:B, 2zrq:A, 2zwo:A, 2zwo:B, 2zwo:C, 2zwp:A, 2zwp:B
14 3d43:B 310 124 0.0989 0.1129 0.2823 6.6 3d43:A, 1ea7:A, 2ixt:A, 2ixt:B
15 2jfn:A 266 34 0.0367 0.0489 0.3824 7.6
16 4lls:A 300 63 0.0621 0.0733 0.3492 9.5 4lls:B, 4llt:A, 4llt:B
17 8bf6:A 278 47 0.0452 0.0576 0.3404 9.5 8bj9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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