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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TAYGCDITTNAVDGFDATIYQYNANDLRLIRDPTFMSTGYLGRNVLNKISGVTVPGFNIWNPSSRTATVYGVKNVNYYNM
VLELKGYFKADVSGDYKLTLSHIDDSSMLFFGKETAFKCCDAGSIPLNEAPTDYSLFTIKPSNQVNSEVISATQYLEAGK
YYPVRIVFVNALERARFDFKLTIPSGAVLDDFQNYIYQFGDL

The query sequence (length=202) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5a3l:A 209 202 1.0000 0.9665 1.0000 8.99e-151 5a3l:B, 5a3l:C, 5a3l:D, 5a3m:A, 5a3m:B, 5a3m:C, 5a3m:D
2 6hos:A 213 205 0.5990 0.5681 0.5902 5.60e-82 6hos:B
3 4gq7:A 220 196 0.3069 0.2818 0.3163 5.65e-29 4lhk:A, 4lhk:B
4 2xjp:A 258 221 0.2871 0.2248 0.2624 1.63e-20 4lhn:A, 2xjr:A, 2xjs:A, 2xjt:A, 2xju:A, 2xjv:A
5 6y9j:A 231 180 0.2475 0.2165 0.2778 4.61e-10 4a3x:A, 4af9:A, 4afa:A, 4afb:A, 4afc:A, 4asl:A, 4d3w:A
6 4coy:A 232 179 0.2574 0.2241 0.2905 5.00e-09 4cou:A, 4cov:A, 4cow:A, 4coz:A
7 6y98:A 225 140 0.2030 0.1822 0.2929 5.30e-09 4cp0:A, 4cp1:A, 4cp2:A
8 4pv4:A 436 118 0.1287 0.0596 0.2203 0.64 4pv4:B
9 5brp:A 555 95 0.1238 0.0450 0.2632 1.3 5brp:B, 5brp:C, 5brp:D, 5brq:A, 5brq:B, 5brq:C, 5brq:D
10 3dza:C 175 43 0.0693 0.0800 0.3256 1.7
11 5hxm:A 1060 61 0.0891 0.0170 0.2951 4.6 5f7u:A, 5hpo:A, 5i0d:A, 5i0d:B, 4kmq:A, 4kwu:A
12 1d7o:A 297 46 0.0545 0.0370 0.2391 7.2 1cwu:A, 1cwu:B, 1eno:A, 1enp:A
13 7pao:9 682 42 0.0594 0.0176 0.2857 7.4 7paq:9, 7par:9, 7pib:9, 7pis:9, 7pit:9
14 3igy:B 549 66 0.1040 0.0383 0.3182 7.9 3igz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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