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BioLiP
>protein
TATQITGVVLAAGRPKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVRAAMALDGTDVVVVEDVRGCAASLRVA
LARVHPRATGIVLMLGDQPQVAPATLRRIIDVGPATEIMVCRYADGVGHPFWFSRTVFGELARLHGDKGVWKLVHSGRHP
VRELAVDGCVPLDVDTWDDYRRLLES

The query sequence (length=186) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2yes:B 186 186 1.0000 1.0000 1.0000 1.45e-132 2yes:A
2 7rzb:A 138 87 0.1505 0.2029 0.3218 0.082
3 8b6d:A 291 41 0.0860 0.0550 0.3902 0.10 8b68:A, 8b6d:B
4 2ux8:A 255 126 0.1667 0.1216 0.2460 0.12 2ux8:H
5 2ux8:G 288 126 0.1667 0.1076 0.2460 0.15 2ux8:B, 2ux8:C, 2ux8:D, 2ux8:E, 2ux8:F
6 2qa2:A 489 104 0.1452 0.0552 0.2596 0.24
7 7vru:B 494 41 0.0806 0.0304 0.3659 1.2 7vs4:B
8 4mnd:A 408 139 0.2097 0.0956 0.2806 1.4
9 2bmb:A 513 69 0.1290 0.0468 0.3478 2.9
10 2dmj:A 106 57 0.0914 0.1604 0.2982 3.0
11 2n8a:A 214 57 0.0914 0.0794 0.2982 3.1 4av1:D, 4av1:B, 2l30:A, 2l31:A, 3od8:D, 3od8:F, 3oda:D, 3oda:F, 3odc:A, 3odc:B, 3ode:A, 3ode:B, 7s81:N, 7s81:A
12 2zoo:A 438 77 0.1344 0.0571 0.3247 4.4
13 8qbn:Y 119 54 0.0645 0.1008 0.2222 6.0
14 7wik:C 196 150 0.1882 0.1786 0.2333 6.2
15 5erm:B 314 56 0.0914 0.0541 0.3036 6.3 5er8:B, 5erm:A
16 5hwg:A 175 65 0.1290 0.1371 0.3692 6.9 5hwh:A
17 8g0h:C 227 54 0.0914 0.0749 0.3148 7.7 4av1:A, 4av1:C, 4dqy:D, 4dqy:A, 4dqy:B, 4dqy:E, 8g0h:A, 2jvn:A, 3od8:A, 3od8:B, 3od8:C, 3od8:E, 3od8:G, 3od8:H, 3oda:A, 3oda:B, 3oda:C, 3oda:E, 3oda:G, 3oda:H, 4opx:D, 4opx:A, 4oqa:D, 4oqa:A, 4oqb:D, 4oqb:A, 2riq:A, 7s68:A, 7s6h:C, 7s6h:A, 7s6m:A, 7s6m:C, 7s81:I, 7s81:F, 7s81:G, 7s81:O, 7s81:J, 7s81:B
18 7a7b:A 323 31 0.0699 0.0402 0.4194 8.4 7a7b:B, 7a7b:C, 7a7b:D, 7a7b:E, 7a7b:F, 7a7b:H, 7apr:A, 7apr:B, 7apr:C, 7apr:D, 7apr:E, 7apr:F, 7apr:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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