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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TATPERFSVLGTTHPKPKRTGFGRNNKMRSKPSDNVAWYDKGPVEWLPRPVRLTYDHLDQLQQWTMRATLDGRTEEFNRI
RDLHREWSQHPLMPVLGDVEPKFPLNLFKQNHRAKKRFLVRWHKANTPANWLWMPRGPTVVTPLHRTNPTQYPENWKQMV
Q

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7aor:ax 161 161 0.9193 0.9193 0.9193 2.72e-111 6hiv:DW, 6hiw:DW, 6hiz:DW, 7pua:DW, 7pub:DW, 6sg9:DW, 6sgb:DW
2 7ane:ax 161 161 0.8137 0.8137 0.8137 2.85e-100
3 7qqg:D 496 62 0.1366 0.0444 0.3548 0.47
4 7qqg:B 623 62 0.1366 0.0353 0.3548 0.55 7qqg:A, 7qqg:C, 7qqh:A, 7qqh:B, 7qqh:C, 7qqh:D
5 5hyn:A 581 60 0.1180 0.0327 0.3167 3.2 5hyn:F, 5hyn:K, 5hyn:Q, 5ls6:A, 5ls6:G, 5ls6:J, 5ls6:D
6 1nyq:B 645 62 0.1180 0.0295 0.3065 4.6 1nyq:A, 1nyr:A, 1nyr:B
7 5hq4:A 662 55 0.0932 0.0227 0.2727 5.1 5hqa:A, 5hqb:A, 5hqc:A
8 6az1:B 211 40 0.0932 0.0711 0.3750 6.6 8a3w:SB, 8a98:SB, 8ovj:SB, 8rxh:SB, 8rxx:SB, 5t2a:AC
9 7s7t:A 509 40 0.0807 0.0255 0.3250 7.8 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
10 4f0l:B 449 33 0.0807 0.0290 0.3939 8.1 4f0l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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