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BioLiP
>protein
TATFHRCAKDPWRLPGTYVVVLKEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHV
DYIEEDSSVFAQ

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6u2f:A 582 92 1.0000 0.1581 1.0000 2.05e-60 7kev:A, 7kfa:A, 4ne9:B, 4nmx:B, 5oca:A, 3p5b:A, 3p5c:A, 2qtw:B, 7s5g:B, 7s5h:B, 6u2p:B, 6u36:B, 6u38:B, 6u3i:A, 6u3x:B, 5vla:A, 5vlh:A, 5vlk:A, 5vll:A, 5vlp:A, 2w2m:A, 2w2n:A, 2w2q:A, 6xib:B, 6xic:B, 6xid:B, 6xie:B, 6xif:B, 2xtj:A
2 8jxu:A 1410 57 0.1957 0.0128 0.3158 0.23 8jxq:A
3 6w80:A 430 76 0.2391 0.0512 0.2895 2.1
4 7bc4:B 2054 36 0.1413 0.0063 0.3611 2.7
5 5ae6:B 767 40 0.1522 0.0183 0.3500 3.8 5a7m:A, 5a7m:B, 5ae6:A
6 1b4u:B 298 50 0.1739 0.0537 0.3200 4.0 1b4u:D, 1bou:B, 1bou:D
7 5mif:C 301 50 0.1630 0.0498 0.3000 4.2 5mif:D
8 4apb:D 462 62 0.2174 0.0433 0.3226 5.0 4adl:A, 4adl:C, 4adl:B, 4adl:D, 4apb:A, 4apb:C, 4apb:B, 5f91:A, 5f91:C, 6s43:A, 6s43:C, 6s7k:A, 6s7k:C, 6s7s:A, 6s7s:C, 6s7u:A, 6s7u:C, 6s7w:A, 6s7w:C, 6s7z:A, 6s7z:C, 6s88:A, 6s88:C
9 1br2:A 673 54 0.1957 0.0267 0.3333 5.1 1br2:B, 1br2:C, 1br2:D, 1br2:E, 1br2:F
10 5t45:A 708 54 0.1957 0.0254 0.3333 5.1 5m05:A
11 3rku:A 268 27 0.0978 0.0336 0.3333 5.6 3rku:B, 3rku:C, 3rku:D
12 7mf3:B 896 54 0.1957 0.0201 0.3333 7.9 1br1:A, 1br1:C, 1br1:E, 1br1:G, 1br4:A, 1br4:C, 1br4:E, 1br4:G, 7mf3:A, 6z47:A, 6z47:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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