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BioLiP
>protein
TASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQ
MPYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVP
HAFTAAKGTGSAKLIAVNF

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4j1x:C 195 193 1.0000 0.9179 0.9275 2.81e-128 2bnm:A, 2bnm:B, 2bnn:A, 2bnn:B, 2bno:A, 2bno:B, 4j1w:A, 4j1w:B, 4j1w:C, 4j1x:A, 4j1x:B, 3scf:A, 3scf:B, 3scf:C, 3scg:A, 3scg:B, 3scg:C, 3sch:A, 3sch:B, 1zz7:A, 1zz7:B, 1zz8:A, 1zz8:B, 1zz8:C, 1zz9:A, 1zz9:B, 1zz9:C, 1zzb:A, 1zzb:B, 1zzc:A, 1zzc:B
2 5u57:A 190 124 0.2346 0.2211 0.3387 8.39e-19 5u55:A, 5u55:B, 5u55:C, 5u55:D, 5u57:B, 5u57:C, 5u57:D, 5u58:A, 5u58:B, 5u58:C, 5u5d:A, 5u5d:B, 5u5d:D
3 6b9t:D 453 80 0.1341 0.0530 0.3000 0.001 6b9s:A, 6b9s:D, 6b9s:C, 6b9s:G, 6b9s:E, 6b9t:A, 6b9t:B, 6b9t:C, 6b9t:E, 6b9t:F, 6b9t:G, 6b9t:H
4 6b9r:C 446 103 0.1397 0.0561 0.2427 0.005 6b9r:A, 6b9r:D, 6b9r:B
5 6b9r:C 446 89 0.1397 0.0561 0.2809 1.4 6b9r:A, 6b9r:D, 6b9r:B
6 3jxb:C 67 37 0.0615 0.1642 0.2973 0.20 3jxb:D, 3jxc:L, 3jxc:R, 3jxd:L, 3jxd:R, 2r1j:L, 2r1j:R
7 6pxa:E 221 53 0.0950 0.0769 0.3208 3.2 6pxa:A, 6pxa:B, 6pxa:C, 6pxa:D, 6pxa:F, 6pxa:G, 6pxa:H, 6pxa:I, 6pxa:J, 6pxa:K, 6pxa:L, 5ux9:A, 5ux9:B, 5ux9:C, 5ux9:D
8 8a0x:A 103 42 0.0838 0.1456 0.3571 4.5 8a0w:A, 8a0w:B, 8a0x:B
9 5meh:A 438 51 0.0894 0.0365 0.3137 5.6 4ayp:A, 4ayq:A, 4ayr:A, 8b5m:A, 5ne5:A
10 3vmm:A 471 17 0.0559 0.0212 0.5882 6.0 3wnz:A, 3wo0:A, 3wo1:A
11 6l6r:A 610 38 0.0782 0.0230 0.3684 6.9 6l6r:B, 7nam:A, 3sob:B, 3soq:A, 3sov:A
12 8tac:B 66 32 0.0670 0.1818 0.3750 7.3
13 1ug9:A 1019 90 0.1397 0.0245 0.2778 7.8 1ulv:A
14 3qcp:A 410 43 0.0894 0.0390 0.3721 7.9 3qd9:A, 3qd9:B, 3qd9:C, 3qd9:D
15 3l24:B 417 69 0.1285 0.0552 0.3333 7.9 3l24:C, 3l7g:B, 3l7g:C
16 6je8:A 469 35 0.0726 0.0277 0.3714 8.7 6jea:A, 6jeb:A
17 6a06:A 188 52 0.0950 0.0904 0.3269 9.4 6a03:A, 6a03:B, 6a04:A, 6a04:B, 6a05:A, 6a05:B, 6a06:B, 6iyf:A, 6iyf:B
18 4zwu:A 435 69 0.1285 0.0529 0.3333 9.8 3l24:A, 3l7g:A, 4zwo:A, 4zwo:B, 4zwp:A, 4zwp:B, 4zwu:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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