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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TAREQRIQWFNHDRFGMFIHWGLYAIPARGEWVRSFERIPVEDYEKYFNSFNPVNYDPKAWAKAAKAAGMKYAVMTTKHH
DGFCLFDSALTDYKATNTPAGRDLIREYADAFRAEGLKVGFYYSIIDWHHPDYPAYGDRQHPMRDNAEFKDRPQDFNRYL
DYMHGQVKELLTNYGTIDVLWFDFSYEDMTGEKWKATELVKMIRELQPNVLIDNRLGGNIKAREPEIYAGDFASPEQLLP
PHGIVNEDGKPLPWEACITLNHHWGYHAHDRDYKTPKQVVRGLVECVSKNGNMLLNVGPNAKGEIPQLSLDVLGEVGAWM
RANGDSIYGCGAAALSKPEWGRYTQKGNKLYAHILDRGIGPIALQGLNGRVKEARLLADGAEVNIQTPWNAVDYPDYLFV
NIPTAQLPDDFNTVIELTLED

The query sequence (length=421) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gn6:F 428 421 1.0000 0.9836 1.0000 0.0 6gn6:A, 6gn6:C, 6gn6:E, 6gn6:D, 6gn6:B
2 4pee:C 446 403 0.3207 0.3027 0.3350 1.61e-72 5hdr:A, 5hdr:B, 5hdr:C, 5hdr:D, 6hzy:A, 6hzy:B, 5i5r:A, 5i5r:B, 5i5r:C, 5i5r:D, 4j28:A, 4j28:B, 4jfs:A, 4jfs:B, 4jft:A, 4jft:B, 4jfu:A, 4jfu:B, 4jfv:A, 4jfv:B, 4jfv:C, 4jfv:D, 4jfw:A, 4jfw:B, 4jfw:C, 4jfw:D, 4jl1:A, 4jl1:B, 4jl2:A, 4jl2:B, 4pcs:A, 4pcs:B, 4pcs:C, 4pcs:D, 4pct:A, 4pct:B, 4pct:C, 4pct:D, 4pee:A, 4pee:B, 4pee:D, 4wsj:A, 4wsj:B, 4wsj:C, 4wsj:D, 4wsk:A, 4wsk:B, 4wsk:C, 2wvs:A, 2wvs:B, 2wvs:C, 2wvs:D, 2wvt:A, 2wvt:B, 2wvu:A, 2wvu:B, 2wvu:C, 2wvu:D, 2xib:A, 2xib:B, 2xib:C, 2xib:D, 2xii:A, 2xii:B
3 6o1j:A 329 327 0.2708 0.3465 0.3486 3.44e-51 6o1a:A, 6o1a:B, 6o1a:C, 6o1a:D, 6o1c:A, 6o1c:B, 6o1c:C, 6o1c:D, 6o1c:E, 6o1c:F, 6o1c:G, 6o1c:H, 6o1j:B, 6o1j:C, 6o1j:D, 6o1j:E, 6o1j:F, 6o1j:G, 6o1j:H, 6ohe:A, 6ohe:B, 6ohe:C, 6ohe:D
4 8p1s:A 335 333 0.2660 0.3343 0.3363 7.66e-48 8p1s:B, 8p1s:C, 8p1s:D, 8p1s:E, 8p1s:F
5 2zx6:A 442 465 0.3159 0.3009 0.2860 7.12e-44 1hl9:A, 1hl9:B, 1odu:A, 1odu:B, 2wsp:A, 2wsp:B, 2zwz:A, 2zwz:B, 2zx5:A, 2zx5:B, 2zx6:B, 2zx7:A, 2zx7:B, 2zx8:A, 2zx8:B, 2zx9:A, 2zx9:B, 2zxa:A, 2zxa:B, 2zxb:A, 2zxb:B, 2zxd:A, 2zxd:B
6 7pm4:A 431 446 0.2803 0.2738 0.2646 2.81e-38 7pm4:B, 7pm4:C, 7pm4:D
7 7lnp:A 565 482 0.2803 0.2088 0.2448 1.94e-30 7ljj:A, 7lk7:A, 7lnp:C, 7lnp:D, 7lnp:E
8 7xsh:A 548 455 0.2637 0.2026 0.2440 6.15e-29 7xsh:B
9 5k9h:A 554 284 0.2162 0.1643 0.3204 3.43e-28
10 4oue:A 459 323 0.2185 0.2004 0.2848 9.21e-23 4oue:B, 4ozo:A, 4ozo:B
11 3ues:B 458 329 0.2114 0.1943 0.2705 4.68e-20 3mo4:A, 3ues:A, 3uet:A, 3uet:B
12 6org:A 450 316 0.2162 0.2022 0.2880 2.16e-18 6or4:A, 6or4:B, 6orf:A, 6orf:B, 6org:B, 6orh:A, 6orh:B
13 4ni3:B 583 388 0.2138 0.1544 0.2320 4.18e-16 4ni3:A, 4psr:A, 4psr:B
14 8ayr:A 677 327 0.1995 0.1241 0.2569 8.33e-15 8ayr:B
15 6tr4:A 506 299 0.1758 0.1462 0.2475 8.20e-13 6tr3:A, 6tr4:B
16 1w6j:A 727 82 0.0475 0.0275 0.2439 3.2 1w6k:A
17 5z43:A 292 61 0.0523 0.0753 0.3607 3.8 5z43:B, 5z44:A, 5z44:B, 5z45:A, 5z45:B, 5z46:A, 5z46:B
18 4wvb:A 394 31 0.0285 0.0305 0.3871 4.4
19 8csz:D 494 22 0.0261 0.0223 0.5000 5.1
20 8ctl:D 401 22 0.0261 0.0274 0.5000 5.2 7utn:D, 7xht:A
21 6rxu:UT 2033 81 0.0499 0.0103 0.2593 7.4 6rxv:UT, 6rxx:UT, 6rxz:UT
22 8fia:A 1772 40 0.0333 0.0079 0.3500 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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