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BioLiP
>protein
TAPVTVFAAASLKESMDEAATAYEKATGTPVRVSYAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLL
GNTLVLVAPASSKLRVDPRAPGAIAKALGENGRLAVGQTASVPAGKYAAAALRKLGQWDSVSNRLAESESVRAALMLVSR
GEAPLGIVYGSDARADAKVRVVATFPDDSHDAIVYPVAALKNSNNPATAAFVSWLGSKPAKAIFARRGFSLK

The query sequence (length=232) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h5y:B 233 232 1.0000 0.9957 1.0000 9.22e-168 3gzg:A, 3gzg:B, 3gzg:C, 2h5y:A, 2h5y:C
2 1amf:A 231 232 0.5172 0.5195 0.5172 1.93e-72 3axf:A, 3axf:B, 3axf:C, 3r26:A, 1wod:A, 4xxu:A, 4xxu:B
3 8k8l:A 231 236 0.5216 0.5238 0.5127 3.51e-69
4 4rxl:A 229 224 0.3966 0.4017 0.4107 1.15e-48
5 4kd5:C 229 231 0.3448 0.3493 0.3463 1.34e-38
6 7tav:B 229 231 0.3147 0.3188 0.3160 3.34e-29 7tav:C, 7tav:F
7 7t5a:A 230 231 0.3233 0.3261 0.3247 1.96e-20 7t50:A, 7t50:B, 7t51:A, 7t51:B, 7t5a:B
8 1atg:A 231 238 0.2931 0.2944 0.2857 6.61e-11
9 1d9y:A 309 73 0.1121 0.0841 0.3562 0.045 1o7t:A, 1o7t:B, 1o7t:C, 1o7t:D, 1o7t:E, 1o7t:F, 1o7t:G, 1o7t:H, 1o7t:I, 1r1n:A, 1r1n:B, 1r1n:C, 1r1n:D, 1r1n:E, 1r1n:F, 1r1n:G, 1r1n:H, 1r1n:I, 1xc1:A, 1xc1:B, 1xc1:C, 1xc1:D, 1xc1:E, 1xc1:F, 1xc1:G, 1xc1:H, 1xc1:I
10 3e13:X 317 59 0.0733 0.0536 0.2881 0.12 1y4t:A, 1y4t:D
11 2gh9:A 378 77 0.0862 0.0529 0.2597 0.14
12 1d9v:A 309 79 0.1078 0.0809 0.3165 0.15 3kn7:A, 3kn8:A, 1mrp:A, 1nnf:A, 2o68:A, 3od7:A, 3odb:A
13 7li0:A 312 31 0.0603 0.0449 0.4516 0.43 7li0:B, 7li1:A, 7li1:B, 7li1:C, 7li1:D
14 4ici:A 159 40 0.0690 0.1006 0.4000 1.6
15 7myv:B 239 86 0.1121 0.1088 0.3023 1.8 7myv:A
16 4j8p:A 156 42 0.0647 0.0962 0.3571 2.4
17 5zbh:A 461 86 0.0905 0.0456 0.2442 2.7
18 4lxh:A 276 76 0.0690 0.0580 0.2105 5.2 4lxi:A, 4lye:A
19 8iqu:A 545 81 0.1034 0.0440 0.2963 6.4 8hd4:A, 8hdf:A
20 1b1x:A 689 34 0.0603 0.0203 0.4118 7.6 1b7z:A, 3cr9:A, 1f9b:A, 1qjm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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