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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGG
ATDTHRLHKEGKLLPLVHQCYLKKSKRKEFQ

The query sequence (length=111) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ht9:B 111 111 1.0000 1.0000 1.0000 7.12e-82 2fls:A, 2ht9:A
2 3uiw:A 110 94 0.4775 0.4818 0.5638 4.52e-38 3uiw:B
3 3fz9:A 106 101 0.4054 0.4245 0.4455 3.51e-26 3fza:A
4 5kqa:A 110 97 0.3514 0.3545 0.4021 4.99e-26
5 3rhc:A 103 88 0.4054 0.4369 0.5114 5.76e-24 3rhb:A, 3rhc:B
6 2e7p:C 115 97 0.3784 0.3652 0.4330 9.36e-23 2e7p:A, 2e7p:B, 2e7p:D
7 4i2u:A 109 95 0.3784 0.3853 0.4421 2.38e-21
8 3d5j:A 112 102 0.3153 0.3125 0.3431 3.50e-16 3d5j:B
9 5j3r:A 114 82 0.2883 0.2807 0.3902 1.96e-14 3l4n:A
10 4rqr:A 107 87 0.2703 0.2804 0.3448 2.35e-14 1b4q:A
11 5w1j:A 584 87 0.2432 0.0462 0.3103 2.59e-13 5w1j:B, 5w1l:A, 5w1l:B
12 8a1r:A 593 93 0.2523 0.0472 0.3011 1.63e-12 8a1r:B, 7b02:A, 6fmu:A, 6fmz:A, 6fp4:A, 6ftc:A, 3h4k:A, 4la1:A, 4la1:B, 7npx:A, 7npx:B, 8pdd:A, 8pdd:B, 8pl0:A, 8pl0:B, 8pl1:A, 8pl1:B, 8pl2:A, 8pl2:B, 8pl3:A, 8pl3:B, 8pl4:A, 8pl4:B, 8pl5:A, 8pl5:B, 8pl6:A, 8pl7:A, 8pl7:B, 8pl8:A, 8pl9:A, 8pl9:B, 8pla:A, 8pla:B, 8plb:A, 8plb:B, 8plc:A, 8plc:B, 8pld:A, 8pld:B, 8ple:A, 8ple:B, 8plf:A, 8plf:B, 8plg:A, 8plh:A, 8pli:A, 8pli:B, 8plj:A, 8plj:B, 8plk:A, 8plk:B, 8pll:A, 8plm:A, 8pln:A, 8plo:A, 8plo:B, 8plp:A, 8plp:B, 8plq:A, 8plq:B, 8plr:A, 8plr:B, 8pls:A, 8pls:B, 8plt:A, 8plt:B, 8plu:A, 8plu:B, 8plv:A, 8plv:B, 8plw:A, 8plw:B, 8plx:A, 8plx:B, 8ply:A, 8ply:B, 6rtj:A, 6rtm:A, 6rto:A, 2v6o:A, 2x8c:A, 2x8c:B, 2x8g:A, 2x8h:A, 2x99:A, 6zlb:A, 6zlp:A, 6zp3:A, 6zst:A
13 2jac:A 108 84 0.2703 0.2778 0.3571 4.45e-12 3c1s:A
14 4tr0:A 92 78 0.2613 0.3152 0.3718 9.43e-12 4tr0:B, 4tr1:A, 4tr1:B
15 4n11:A 108 89 0.2613 0.2685 0.3258 1.44e-11 7din:A, 7dio:A, 7dip:A, 7diq:A
16 3grx:A 82 83 0.2523 0.3415 0.3373 1.24e-09
17 3msz:B 87 73 0.1982 0.2529 0.3014 3.69e-06 3msz:A
18 7pwe:A 194 71 0.1802 0.1031 0.2817 5.16e-04 7pwe:B
19 1grx:A 85 79 0.2342 0.3059 0.3291 0.001 1qfn:A
20 2wci:A 113 105 0.2072 0.2035 0.2190 0.001 2wci:B
21 2yan:B 105 89 0.1892 0.2000 0.2360 0.003
22 5cax:A 96 35 0.1171 0.1354 0.3714 0.003 5cax:B, 5cax:C, 5cax:D
23 3whk:A 248 72 0.1622 0.0726 0.2500 0.003 3whk:B, 3whk:C, 3whk:D, 3whk:E, 3whk:F, 3whk:G, 3whk:H, 3whl:A, 3whl:C, 3whl:E, 3whl:G
24 2wul:A 109 28 0.0901 0.0917 0.3571 0.039 2wul:B, 2wul:C, 2wul:D
25 9f7k:A 222 77 0.2072 0.1036 0.2987 0.26 9f7k:B
26 4pom:A 107 26 0.1081 0.1121 0.4615 0.90 1cqg:A, 1cqh:A, 1mdi:A, 1mdj:A, 1mdk:A, 4pol:A, 4pol:B
27 5eqt:A 249 64 0.1441 0.0643 0.2500 1.00
28 6sga:Fa 163 57 0.1622 0.1104 0.3158 1.3 6sg9:Fa, 6sgb:Fa
29 8y6o:U 458 50 0.1351 0.0328 0.3000 6.2 8h6e:4T, 8h6j:4T, 6qw6:U, 6qx9:U
30 3sc6:D 283 55 0.1351 0.0530 0.2727 7.2 3sc6:A, 3sc6:B, 3sc6:C, 3sc6:E, 3sc6:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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