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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TAPRIKKFAIYRWDPDKAGDKPHMQTYEVDLNKCGPMVLDALIKIKNEVDSTLTFRRSCREGICGSCAMNINGGNTLACT
RRIDTNLNKVSKIYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCST
SCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATY

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3sfe:B 240 238 0.9707 0.9667 0.9748 1.51e-178 3abv:B, 3ae1:B, 3ae2:B, 3ae3:B, 3ae4:B, 3ae5:B, 3ae6:B, 3ae7:B, 3ae8:B, 3ae9:B, 3aea:B, 3aeb:B, 3aec:B, 3aed:B, 3aee:B, 3aef:B, 3aeg:B, 7kcm:C, 3sfd:B, 4ytp:B, 4yxd:B, 1zoy:B, 1zp0:B
2 1yq3:B 242 236 0.9038 0.8926 0.9153 1.61e-168 2fbw:B, 2fbw:O, 8gs8:B, 2h88:B, 2h88:O, 2h89:B, 6myo:B, 6myp:B, 6myq:B, 6myr:B, 6mys:B, 6myt:B, 6myu:B, 2wqy:B, 2wqy:O, 1yq4:B
3 4ysx:F 252 236 0.7071 0.6706 0.7161 2.25e-129 5c2t:B, 5c2t:F, 5c3j:B, 5c3j:F, 3vr8:B, 3vr8:F, 3vr9:B, 3vr9:F, 3vra:B, 3vra:F, 3vrb:B, 3vrb:F, 4ysx:B, 4ysy:B, 4ysy:F, 4ysz:B, 4ysz:F, 4yt0:B, 4yt0:F, 4ytm:B, 4ytm:F, 4ytn:B, 4ytn:F
4 8b6g:CB 285 236 0.5188 0.4351 0.5254 9.80e-93 8bqs:CB, 8gym:sb, 8gym:SB, 8gzu:sb, 8gzu:SB
5 2acz:B 238 234 0.5439 0.5462 0.5556 1.23e-87 7jz2:B, 7jz2:F, 7jz2:J, 1nek:B, 1nen:B, 2wdq:B, 2wdq:F, 2wdq:J, 2wdr:B, 2wdr:F, 2wdr:J, 2wdv:B, 2wdv:F, 2wdv:J, 2wp9:B, 2wp9:F, 2wp9:J, 2ws3:B, 2ws3:F, 2ws3:J, 2wu2:B, 2wu2:F, 2wu2:J, 2wu5:B, 2wu5:F, 2wu5:J, 6wu6:B, 6wu6:F, 6wu6:J
6 6lum:K 247 235 0.3808 0.3684 0.3872 1.57e-48 6lum:B, 6lum:Q
7 2b76:B 243 227 0.2929 0.2881 0.3084 1.08e-32 6awf:B, 6awf:F, 2b76:N, 3cir:B, 3cir:N, 1kf6:B, 1kf6:N, 1kfy:B, 1kfy:N, 4kx6:B, 4kx6:N, 1l0v:B, 1l0v:N, 3p4p:B, 3p4p:N, 3p4q:B, 3p4q:N, 3p4r:B, 3p4r:N, 3p4s:B, 3p4s:N, 5vpn:B, 5vpn:F
8 2bs2:B 239 237 0.3096 0.3096 0.3122 4.01e-32 2bs2:E, 2bs3:B, 2bs3:E, 2bs4:B, 2bs4:E, 1e7p:B, 1e7p:E, 1e7p:H, 1e7p:K, 1qlb:B, 1qlb:E
9 5xmj:B 240 239 0.2803 0.2792 0.2803 2.76e-26 5xmj:F, 5xmj:J, 5xmj:N
10 7d6v:B 239 212 0.2427 0.2427 0.2736 2.04e-19 7d6x:B
11 8rbq:C 477 18 0.0502 0.0252 0.6667 0.15 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
12 6icm:D 87 51 0.0628 0.1724 0.2941 0.44
13 7dqx:C 160 55 0.0711 0.1062 0.3091 0.51 7dqx:F
14 4hea:9 180 77 0.0962 0.1278 0.2987 0.51 2fug:9, 2fug:G, 2fug:P, 2fug:Y, 4hea:O, 6i0d:9, 6i0d:O, 6i1p:9, 6i1p:O, 3i9v:9, 3i9v:G, 3iam:9, 3iam:G, 3ias:9, 3ias:G, 3ias:P, 3ias:Y, 3m9s:9, 3m9s:G, 6q8o:9, 6q8o:O, 6q8w:9, 6q8w:O, 6q8x:9, 6q8x:O, 6y11:9, 6y11:O, 2ybb:8, 6ziy:9, 6zjl:9, 6zjn:9, 6zjy:9
15 7qv7:D 448 100 0.0921 0.0491 0.2200 0.77 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
16 5y6q:A 157 47 0.0544 0.0828 0.2766 0.90
17 2w2l:A 346 76 0.0753 0.0520 0.2368 1.0 2w2l:B, 2w2l:C, 2w2l:D
18 7ane:aa 1514 32 0.0586 0.0092 0.4375 1.1
19 7bkb:C 189 84 0.0921 0.1164 0.2619 1.5 7bkb:c, 7bkc:C, 7bkc:c, 7bkd:C, 7bkd:c, 7bke:C, 7bke:c
20 5mc6:h 1121 84 0.1004 0.0214 0.2857 2.5 4a4k:A, 4a4k:C, 4a4k:E, 4a4k:G, 4a4k:I
21 5odc:C 184 92 0.0921 0.1196 0.2391 2.7 5odc:I, 5odh:C, 5odh:I, 5odi:C, 5odi:I, 5odq:C, 5odq:I, 5odr:C, 5odr:I
22 3ftf:A 246 58 0.0795 0.0772 0.3276 2.8 3fte:A, 3r9x:B
23 6hiv:DA 1557 35 0.0669 0.0103 0.4571 3.6 6hiw:DA, 7pub:DA
24 6hiy:DA 1426 35 0.0669 0.0112 0.4571 3.8
25 7aor:aa 1558 28 0.0586 0.0090 0.5000 4.5
26 4i2y:A 381 34 0.0502 0.0315 0.3529 5.4 4i2y:B
27 3o78:A 402 27 0.0377 0.0224 0.3333 8.4 7aug:A, 3ek4:A, 3ek7:A, 3ek8:A, 3ekh:A, 3evr:A, 3evu:A, 3evv:A, 4ik1:A, 4ik3:A, 4ik4:A, 4ik5:A, 4ik8:A, 4ik9:A, 3o77:A, 3o78:B, 3sg2:A, 3sg3:A, 3sg4:A, 3sg5:A, 3sg6:A, 3sg7:A, 7st4:A, 6tv7:A, 3wlc:A, 3wld:A, 6ya9:A, 6zsm:A, 6zsn:A
28 6u2m:A 464 70 0.0879 0.0453 0.3000 8.5 8aht:C, 1ak8:A, 3b32:A, 7cqv:E, 5dsu:A, 2i08:A, 1j7o:A, 6jiu:C, 6jiu:F, 6jiu:I, 6jiu:L, 2kug:A, 6pjx:B, 2pq3:A, 4q57:A, 6u2m:C, 3uct:B, 3ucw:C, 3ucy:A
29 4rf7:B 700 115 0.1088 0.0371 0.2261 9.3 4rf7:A, 4rf8:A, 4rf8:B, 4rf9:A, 4rf9:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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