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BioLiP
>protein
TAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVV
TDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCS
IPLRVGLPLLSPEFLLTGVLKQEAKPEAFVLSPLE

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3k05:B 200 195 0.9949 0.9700 0.9949 1.59e-141 2azm:A, 2azm:B, 3k05:A
2 3sqd:A 211 201 0.3333 0.3081 0.3234 1.29e-30 3sqd:B
3 3l41:A 214 195 0.2923 0.2664 0.2923 6.90e-18
4 7p0l:A 195 157 0.1846 0.1846 0.2293 1.20e-08 7p0l:B
5 3szm:C 191 174 0.2103 0.2147 0.2356 6.57e-04 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A
6 8ir2:B 198 70 0.1128 0.1111 0.3143 0.005 8ir2:A, 8ir4:A, 8ir4:B
7 5ecg:C 227 160 0.2051 0.1762 0.2500 0.027 5ecg:D, 1gzh:D
8 3al3:A 218 45 0.0667 0.0596 0.2889 1.5 7cmz:A
9 8j9f:D 749 34 0.0821 0.0214 0.4706 4.0 8j9f:A, 8j9f:B
10 6a7i:A 409 52 0.0769 0.0367 0.2885 4.3 6a7j:A
11 1elj:A 380 90 0.1282 0.0658 0.2778 5.3
12 7thq:B 505 27 0.0718 0.0277 0.5185 6.9 6o6e:B, 7thq:A
13 4n5k:A 318 77 0.1026 0.0629 0.2597 9.3 4bsb:A, 4bsc:A, 4bsd:A, 4bse:A, 4bsf:A, 4bsh:A, 4bsi:A, 6d8d:A, 6d8d:C, 6d8d:E, 4dj7:A, 4dj7:C, 4dj7:E, 4dj8:A, 4dj8:C, 4dj8:E, 6idb:A, 6idz:A, 4kom:A, 4kon:A, 4lkg:A, 4lkg:C, 4lkg:E, 4lkh:A, 4lkj:A, 4lkk:A, 4ln6:A, 4ln6:C, 4ln6:E, 4ln6:G, 4ln6:I, 4ln6:K, 4ln8:A, 4ln8:C, 4ln8:E, 4ln8:G, 4ln8:I, 4ln8:K, 4n5k:C, 4n60:A, 4n60:C, 4n61:A, 4n61:C, 4n62:A, 4n62:C, 4n63:A, 4n63:C, 4n64:A, 4n64:C, 5t6s:A, 5t6s:C, 5t6s:E, 5t6s:I, 5t6s:K, 5t6s:G, 5vjl:A, 5vjm:A
14 6c0f:A 394 38 0.0667 0.0330 0.3421 9.3 6cb1:A, 6em1:5, 6em3:5, 6em4:5, 7ohs:5, 7ohw:5, 7ohx:5, 8v83:I, 8v84:I, 5z3g:V
15 4pfb:A 308 19 0.0564 0.0357 0.5789 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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