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BioLiP
>protein
TAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVV
TDPEQEKNFGFSLQDALSRARERRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCS
IPLRVGLPLLSPEFLLDGVLKQEAKPEAFVLSP

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3k05:B 200 193 1.0000 0.9650 1.0000 5.06e-141 2azm:A, 2azm:B, 3k05:A
2 3sqd:A 211 201 0.3316 0.3033 0.3184 7.51e-30 3sqd:B
3 3l41:A 214 195 0.2953 0.2664 0.2923 7.20e-18
4 7p0l:A 195 157 0.1865 0.1846 0.2293 3.59e-08 7p0l:B
5 3szm:C 191 174 0.2176 0.2199 0.2414 6.63e-05 3shv:A, 3shv:B, 3szm:A, 3szm:B, 3szm:D, 3szm:E, 3szm:F, 3szm:G, 3szm:H, 3t1n:A, 3t1n:B, 3u3z:A
6 8ir2:B 198 70 0.1140 0.1111 0.3143 0.005 8ir2:A, 8ir4:A, 8ir4:B
7 5ecg:C 227 160 0.2073 0.1762 0.2500 0.020 5ecg:D, 1gzh:D
8 3al3:A 218 45 0.0674 0.0596 0.2889 1.4 7cmz:A
9 6a7i:A 409 52 0.0777 0.0367 0.2885 4.2 6a7j:A
10 1elj:A 380 90 0.1347 0.0684 0.2889 5.2
11 7thq:B 505 27 0.0725 0.0277 0.5185 6.7 6o6e:B, 7thq:A
12 6c0f:A 394 38 0.0674 0.0330 0.3421 8.8 6cb1:A, 6em1:5, 6em3:5, 6em4:5, 7ohs:5, 7ohw:5, 7ohx:5, 8v83:I, 8v84:I, 5z3g:V
13 4pfb:A 308 19 0.0570 0.0357 0.5789 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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