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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTP
AAKLVGAINTIVNDDGYLRGYNTDGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEK
AVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQ
QAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVMGF

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1npd:B 288 283 0.9117 0.8958 0.9117 0.0 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B
2 3toz:A 291 281 0.5159 0.5017 0.5196 6.91e-111 3tnl:A, 3tnl:B, 3tnl:C, 3tnl:D, 3toz:B, 3toz:C, 3toz:D, 3toz:E, 3toz:F, 3toz:G, 3toz:H
3 2hk9:A 269 273 0.3322 0.3494 0.3443 2.07e-48 2hk9:B, 2hk9:C, 2hk9:D
4 1nvt:A 287 272 0.3675 0.3624 0.3824 5.43e-47 1nvt:B
5 2ev9:B 263 263 0.2792 0.3004 0.3004 2.47e-31 2cy0:A, 2d5c:A, 2d5c:B, 2ev9:A
6 3doo:A 258 269 0.2898 0.3178 0.3048 2.50e-31
7 7col:A 280 276 0.2968 0.3000 0.3043 4.89e-30 7col:B
8 2o7q:A 501 280 0.3145 0.1776 0.3179 4.33e-29 6bmb:A, 6bmq:A, 2gpt:A, 2o7s:A
9 3pgj:A 272 264 0.2968 0.3088 0.3182 1.65e-25 3pgj:B, 3pgj:C, 3pgj:D, 3sef:A, 3sef:B
10 4k28:A 266 266 0.2792 0.2970 0.2970 5.37e-21 4k28:B
11 3sef:C 244 257 0.2686 0.3115 0.2957 7.60e-21
12 1nyt:A 271 272 0.2650 0.2768 0.2757 4.80e-20 1nyt:B, 1nyt:C, 1nyt:D
13 3jyo:A 282 274 0.2792 0.2801 0.2883 1.94e-18 3jyp:A, 3jyq:A
14 4p4g:A 265 268 0.2933 0.3132 0.3097 1.22e-17 4p4l:A, 4p4l:B, 4p4l:C
15 6hqv:A 1555 279 0.2933 0.0534 0.2975 1.28e-17 6hqv:B
16 4fos:A 263 293 0.2686 0.2890 0.2594 4.17e-16 4fq8:A, 4fq8:B, 4fr5:A, 4fr5:B, 4fsh:A, 3phh:A, 3phi:A, 3phi:B, 3phj:A, 3phj:B
17 7tbv:A 682 292 0.2862 0.1188 0.2774 5.19e-16 7tbv:B, 7tbv:C, 7tbv:D
18 1p77:A 265 272 0.2509 0.2679 0.2610 8.91e-15
19 5jox:A 502 149 0.1272 0.0717 0.2416 0.15 5jox:B, 5joy:A, 5joy:B
20 6tlk:A 289 109 0.1237 0.1211 0.3211 0.18 1lua:A, 1lua:B, 1lua:C, 6tge:A, 6tge:C, 6tge:B, 6tge:D, 6tge:F, 6tge:E, 6tge:G, 6tge:I, 6tge:H, 6tge:J, 6tge:L, 6tge:K, 6tge:M, 6tge:O, 6tge:N, 6tge:P, 6tge:R, 6tge:Q, 6tge:S, 6tge:U, 6tge:T, 6tge:V, 6tge:X, 6tge:W, 6tlk:B, 6tlk:C, 6tlk:D, 6tlk:E, 6tlk:F, 6tm3:A
21 5eqt:A 249 56 0.0707 0.0803 0.3571 1.9
22 1wql:A 436 109 0.1095 0.0711 0.2844 2.0
23 3oqo:A 333 49 0.0601 0.0511 0.3469 3.8 3oqm:A, 3oqm:C, 3oqn:A, 3oqn:C, 3oqo:C
24 3j9w:AL 137 41 0.0459 0.0949 0.3171 3.8 8buu:l, 8cdu:L, 8cdv:L, 8cec:L, 8ced:L, 8cee:L, 6ha1:l, 6ha8:l, 6htq:l, 5njt:L, 7o5b:L, 8qcq:l, 7qgu:q, 7qh4:p, 8qpp:L, 7qv1:l, 7qv2:l, 7qv3:l, 8r55:L
25 1i6u:A 129 31 0.0389 0.0853 0.3548 7.3 1i6u:B
26 4iw9:B 215 57 0.0671 0.0884 0.3333 8.8 4iw9:A, 4iw9:C
27 7d69:E 99 51 0.0495 0.1414 0.2745 9.1 7d69:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218