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BioLiP
>protein
SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKK
IPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHIL
KLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVD
LA

The query sequence (length=242) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3c02:A 242 242 1.0000 1.0000 1.0000 2.45e-175
2 6f7h:C 253 245 0.3595 0.3439 0.3551 4.73e-43 6f7h:A, 6f7h:B
3 8c9h:A 253 233 0.3223 0.3083 0.3348 2.63e-39 8c9h:B, 8c9h:C, 8c9h:D, 8c9h:E, 8c9h:F, 8c9h:G, 8c9h:H, 6n1g:A, 6n1g:C, 6n1g:B, 6n1g:D, 6qzi:A, 6qzj:A
4 1fx8:A 254 248 0.3802 0.3622 0.3710 9.74e-36
5 8jy6:A 242 236 0.3223 0.3223 0.3305 4.87e-30 8jy6:B, 8jy6:C, 8jy6:D, 8jy8:A, 8jy8:B, 8jy8:C, 8jy8:D
6 2evu:A 245 261 0.3140 0.3102 0.2912 5.22e-20 2f2b:A
7 8sjx:A 220 238 0.2686 0.2955 0.2731 2.01e-11 8sjy:A
8 5dye:D 253 242 0.2727 0.2609 0.2727 8.46e-09 5c5x:A, 5c5x:B, 5c5x:C, 5c5x:D, 5c5x:E, 5c5x:H, 3d9s:C, 3d9s:D, 5dye:A, 5dye:B, 5dye:C
9 8ct2:D 247 249 0.2562 0.2510 0.2490 2.61e-08 8ct2:B, 8ct2:C, 8ct2:A, 8cte:O, 8cte:S, 8cte:R, 8cte:M, 7uze:D, 7uze:B, 7uze:C, 7uze:A
10 4nef:A 239 243 0.2645 0.2678 0.2634 2.90e-08
11 8uy6:A 244 195 0.2273 0.2254 0.2821 1.98e-07 3nka:A, 2o9e:A, 8uy6:C, 8uy6:E, 8uy6:G, 8uy6:I, 8uy6:K, 8uy6:M, 8uy6:O
12 5bn2:A 260 225 0.2397 0.2231 0.2578 0.007
13 4mz0:B 823 92 0.1198 0.0352 0.3152 0.72
14 4mz0:A 896 92 0.1198 0.0324 0.3152 0.73
15 6iit:B 100 87 0.1074 0.2600 0.2989 1.5 6iiq:A, 6iiq:B, 6iir:A, 6iir:B, 6iis:B, 6iis:A, 6iit:A
16 8ciw:A 555 46 0.0661 0.0288 0.3478 3.4 8ciw:B
17 1orf:A 232 52 0.0496 0.0517 0.2308 5.1
18 6ao8:A 569 79 0.1074 0.0457 0.3291 5.5
19 5ayk:A 744 35 0.0702 0.0228 0.4857 7.6 5ayl:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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