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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV
TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWT

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3j06:A 155 151 0.9869 0.9742 1.0000 8.19e-109 2om3:A, 7q22:A, 7q23:A, 7q2q:A, 7q2r:A, 7q2s:A, 6rlp:A, 6rlp:B, 6rlp:H, 6rlp:O, 6rlp:C, 6rlp:I, 6rlp:N, 6rlp:D, 6rlp:E, 6rlp:F, 6rlp:W, 6rlp:G, 6rlp:J, 6rlp:T, 6rlp:K, 6rlp:L, 6rlp:M, 6rlp:P, 6rlp:X, 6rlp:Q, 6rlp:S, 6rlp:U, 6rlp:V, 6rlp:Y, 6sae:A, 6sag:A, 2tmv:P, 4udv:A, 2xea:A
2 1vtm:P 158 152 0.7255 0.7025 0.7303 9.31e-83
3 6x0q:C 140 91 0.5882 0.6429 0.9890 4.53e-63 6x0q:D, 6x0q:G, 6x0q:J, 6x0q:K, 6x0q:L, 6x0q:N, 6x0q:P
4 6x0q:C 140 42 0.2745 0.3000 1.0000 6.67e-22 6x0q:D, 6x0q:G, 6x0q:J, 6x0q:K, 6x0q:L, 6x0q:N, 6x0q:P
5 1rmv:A 156 153 0.4575 0.4487 0.4575 7.68e-43
6 3pdm:P 162 147 0.4052 0.3827 0.4218 1.25e-33
7 1cgm:E 160 153 0.3791 0.3625 0.3791 3.38e-33
8 7dc9:D 161 29 0.0784 0.0745 0.4138 1.1 7dbf:A, 7dbf:D, 7dc9:A, 7dca:A, 7dca:D, 7dcb:A, 7dcb:D, 7dcw:A, 7dcw:D, 7dgc:A, 7dgc:D, 7dh1:A, 7dh1:D, 7dlc:A, 7dlc:D, 7dm5:A, 7dm5:D, 7dm6:A, 7dm6:D, 7dow:A, 7dow:D, 7dox:A, 7dox:D, 7doy:A, 7doy:D, 7dpk:A, 7dpk:D, 7dqn:A, 7dqn:D, 5jfy:A, 5jfy:B, 5jfy:C, 5jfy:D, 7w1q:A, 7w1q:D
9 1a26:A 351 34 0.0784 0.0342 0.3529 2.0 1efy:A, 6i8m:A, 6i8t:A, 1pax:A, 2pax:A, 3pax:A, 4pax:A
10 4p0d:A 471 19 0.0523 0.0170 0.4211 2.2
11 7epr:B 310 67 0.1569 0.0774 0.3582 3.7 7epr:A, 7epr:C, 7epr:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218