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BioLiP
>protein
SYRDKKVMSIGIVKELTGLSERQIRYYEKRSLLFPDRTNTGIRKYSFSDVERLMDIADRIEEGVQTSEIRTELAKKDEAR
KM

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4r24:B 85 82 1.0000 0.9647 1.0000 7.09e-55 4r22:B
2 4r4e:B 84 75 0.4390 0.4286 0.4800 6.90e-19
3 7tea:B 78 68 0.3537 0.3718 0.4265 7.88e-14 7tea:E, 7tea:A, 7tea:C
4 7tec:A 72 67 0.3171 0.3611 0.3881 5.60e-12
5 2vz4:A 100 74 0.2805 0.2300 0.3108 1.50e-05
6 5c8d:E 280 72 0.3537 0.1036 0.4028 2.79e-05 8c31:A, 8c31:B, 8c31:C, 8c31:D, 8c32:A, 8c32:B, 8c32:C, 8c32:D, 8c33:A, 8c33:B, 8c33:C, 8c33:D, 8c34:A, 8c34:B, 8c34:C, 8c34:D, 8c35:A, 8c35:B, 8c35:C, 8c35:D, 8c36:A, 8c36:B, 8c36:C, 8c36:D, 8c37:A, 8c37:B, 8c37:C, 8c37:D, 8c73:A, 8c73:B, 8c73:C, 8c73:D, 8c76:A, 8c76:B, 8c76:C, 8c76:D, 5c8a:A, 5c8a:B, 5c8a:C, 5c8a:D, 5c8d:A, 5c8d:B, 5c8d:C, 5c8d:D, 5c8d:F, 5c8d:G, 5c8d:H, 5c8e:A, 5c8e:B, 5c8e:C, 5c8e:E, 5c8e:F, 5c8e:G, 5c8e:D, 5c8e:H, 5c8f:A, 3whp:A
7 1r8d:A 109 70 0.3171 0.2385 0.3714 4.98e-05 1r8d:B
8 3gp4:A 132 86 0.3415 0.2121 0.3256 9.26e-05 3gp4:B
9 4wlw:A 130 47 0.2073 0.1308 0.3617 7.02e-04 7c17:G, 7c17:H, 6ldi:G, 6ldi:H, 1q05:A, 1q05:B, 4wls:A, 4wls:B, 6xh7:G, 6xh7:H, 6xh8:G, 6xh8:H
10 6jni:A 145 71 0.3049 0.1724 0.3521 0.006 6jgw:B, 6jgw:A, 6jgx:A, 6jgx:B, 6jni:B, 6jni:H, 6jni:C, 6jni:D, 6jni:E, 6jni:F, 6jni:G, 6jyw:A, 6jyw:B
11 5crl:B 119 46 0.1585 0.1092 0.2826 0.22
12 5xbt:A 271 52 0.1829 0.0554 0.2885 0.82 5xbi:A, 5xbi:B, 5xbt:B, 5xql:A
13 5i44:B 68 63 0.1829 0.2206 0.2381 0.88 5i44:A, 5i44:D, 5i44:E, 5i44:H, 5i44:J, 5i44:K, 5i44:G, 5i44:F, 5i44:I
14 6ypa:B 269 45 0.1829 0.0558 0.3333 1.1 7ovg:A, 7ovg:B, 6ypa:A, 6ypa:C, 6ypa:D
15 6xl5:G 268 64 0.2195 0.0672 0.2812 1.1 6wl5:A, 6wl5:B, 6wl5:C, 6wl5:D, 6xl5:H, 6xl6:G, 6xl6:H, 6xl9:G, 6xl9:H, 6xla:G, 6xla:H, 6xlj:G, 6xlj:H, 6xlk:G, 6xlk:H
16 8a2c:A 268 39 0.1829 0.0560 0.3846 1.4 8a2c:B
17 8xho:A 262 57 0.2195 0.0687 0.3158 1.6 8xho:B
18 3d6y:A 277 47 0.2073 0.0614 0.3617 3.3 1bow:A, 7ckq:G, 7ckq:I, 3d6z:A, 3d70:A, 3d71:A, 1exi:A, 1exj:A, 3q1m:A, 3q2y:A, 3q3d:A, 3q5p:A, 3q5r:A, 3q5s:A, 1r8e:A
19 6o6v:A 433 51 0.2073 0.0393 0.3333 3.4 6o6v:B, 6o6x:A, 6o6x:B, 6o6y:A, 6o6y:B, 6o6z:A, 6o6z:B, 6o70:A, 6o70:B, 6o71:A, 6o71:B, 6ov0:A, 6ov0:B, 6ov0:C, 6ov0:D
20 6bzo:F 326 37 0.1463 0.0368 0.3243 3.4 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
21 8dtz:A 4061 74 0.2073 0.0042 0.2297 3.8 8dtz:B, 8dtz:C, 8dtz:D
22 8ot8:A 412 32 0.1585 0.0316 0.4062 4.8 8ot8:B, 8ot8:C, 8ot8:D
23 4ua1:B 125 73 0.2927 0.1920 0.3288 6.7 4ua1:A
24 8j6h:D 407 57 0.2073 0.0418 0.2982 7.2 8j6h:A, 8j6h:B, 8j6h:C
25 8jb3:A 419 57 0.2073 0.0406 0.2982 7.5
26 7xn2:A 148 27 0.0976 0.0541 0.2963 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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