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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SYQDLKECKIITAFITPFHEDGSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIA
GVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIPGRVVVELTPETMLRLADH
PNIIGVKECTSLANMAYLIEHKPEEFLIYTGEDGDAFHAMNLGADGVISVASHTNGDEMHEMFTAIAESDMKKAAAIQRK
FIPKVNALFSYPSPAPVKAILNYMGFEAGPTRLPLVPAPEEDVKRIIKVVVDGDYEATVTGVLRPDY

The query sequence (length=307) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fha:A 307 307 1.0000 1.0000 1.0000 0.0 4fha:B
2 5ktl:A 295 279 0.3909 0.4068 0.4301 6.14e-75 5ktl:B
3 1o5k:A 295 284 0.3453 0.3593 0.3732 1.76e-68
4 4dxv:A 291 272 0.3518 0.3711 0.3971 1.70e-66 3pue:B, 3pul:B, 3rk8:A, 3rk8:B, 3tak:A, 3tak:B, 3tce:A, 3tce:B, 3tdf:A, 3tdf:B, 3u8g:A, 3u8g:B
5 5t25:A 293 283 0.3616 0.3788 0.3922 3.76e-64 2ats:A, 2ats:B, 3i7s:A, 3i7s:B, 7jz8:A, 7jz8:B, 7jza:A, 7jza:B, 7jzb:A, 7jzb:B, 7jzg:A, 7jzg:B, 5t25:B, 1yxd:A, 1yxd:B
6 5ud6:C 299 273 0.3616 0.3712 0.4066 9.03e-62 5ud6:A, 5ud6:B, 5ud6:D
7 3puo:A 292 266 0.3583 0.3767 0.4135 2.73e-60 3puo:B, 3s8h:A, 3s8h:B
8 4pfm:A 295 273 0.3420 0.3559 0.3846 5.70e-58 4pfm:B
9 5j5d:A 297 276 0.3485 0.3603 0.3877 2.63e-57 3l21:B, 1xxx:A, 1xxx:B, 1xxx:C, 1xxx:D, 1xxx:E, 1xxx:F, 1xxx:G, 1xxx:H
10 3di1:B 291 280 0.3453 0.3643 0.3786 4.51e-53 3di1:A
11 4i7w:A 294 286 0.3420 0.3571 0.3671 1.95e-49 4i7w:B
12 7lvl:A 296 287 0.3388 0.3514 0.3624 1.49e-47 7lvl:B, 7lvl:C, 7lvl:E, 7lvl:D, 7lvl:F, 7mjf:A, 7mjf:B, 7mjf:C, 7mjf:D, 7mjf:E, 7mjf:F
13 7kkd:B 306 284 0.3094 0.3105 0.3345 2.22e-44 5f1u:A, 5f1u:B, 5f1u:C, 5f1u:D, 5f1v:A, 5f1v:C, 5f1v:B, 5f1v:D, 7kg2:A, 7kg2:C, 7kg2:B, 7kg2:D, 7kg2:E, 7kg2:F, 7kg5:A, 7kg5:B, 7kg5:C, 7kg5:E, 7kg5:F, 7kg9:A, 7kg9:E, 7kg9:B, 7kg9:C, 7kg9:D, 7kg9:F, 7kh4:A, 7kh4:F, 7kh4:B, 7kh4:C, 7kh4:D, 7kh4:E, 7kk1:A, 7kk1:B, 7kk1:C, 7kk1:D, 7kk1:E, 7kk1:F, 7kkd:A, 7kkd:F, 7kkd:E, 7kkd:C, 7kkd:D, 7kkg:A, 7kkg:D, 7kkg:B, 7kkg:E, 7kkg:C, 7kkg:F, 7kkt:A, 7kkt:F, 7kkt:B, 7kkt:E, 7kkt:C, 7kkt:D, 7kls:A, 7kls:F, 7kls:B, 7kls:C, 7kls:D, 7kls:E, 7klt:A, 7klt:C, 7klt:E, 7klt:F, 7kly:A, 7kly:D, 7kly:B, 7kly:C, 7kly:E, 7kly:F, 7km0:B, 7km0:C, 7km0:A, 7km0:D, 7km0:E, 7km0:F, 7km1:A, 7km1:B, 7km1:C, 7km1:D, 7km1:E, 7km1:F, 7kn9:A, 7kn9:B, 7kn9:C, 7kn9:D, 7kn9:E, 7kn9:F, 7knz:B, 7knz:C, 7knz:A, 7knz:D, 7knz:E, 7knz:F, 7ko3:A, 7ko3:B, 7ko3:C, 7ko3:D, 7ko3:E, 7ko3:F, 7kpc:A, 7kpc:B, 7kpc:C, 7kpc:D, 7kpc:E, 7kpc:F, 7kpe:B, 7kpe:C, 7kpe:A, 7kpe:D, 7kpe:E, 7kpe:F, 7kr7:A, 7kr7:E, 7kr7:B, 7kr7:C, 7kr7:D, 7kr7:F, 7kr8:B, 7kr8:D, 7kto:A, 7kto:B, 7kto:C, 7kto:D, 7kto:E, 7kto:F, 7ku6:D, 7kuz:A, 7kuz:F, 7kuz:B, 7kuz:C, 7kuz:D, 7kuz:E, 7kwf:B, 7kwf:F, 7kwf:A, 7kwf:C, 7kwf:D, 7kwf:E, 7kwn:B, 7kwp:A, 7kwp:B, 7kwp:C, 7kwp:D, 7kwp:E, 7kwp:F, 7kx1:A, 7kxg:A, 7kxg:C, 7kxg:B, 7kxg:D, 7kxg:E, 7kxg:F, 7kxh:A, 7kxh:D, 7kxh:B, 7kxh:C, 7kxh:E, 7kxh:F, 7kz2:A, 7kz2:D, 7kz2:B, 7kz2:C, 7kz2:E, 7kz2:F, 7lcf:A, 7lcf:B, 7lcf:F, 7lcf:C, 7lcf:D, 7lcf:I, 7lcf:E, 7lcf:G, 7lcf:H, 7lcf:J, 7lcf:K, 7lcf:L, 7m06:B, 7m06:C, 7m06:D, 4m19:A, 4m19:B, 4m19:C, 4m19:D, 4mlr:A, 4mlr:D, 4mlr:C, 4mlr:E, 4mlr:F, 4mlr:G, 4mlr:H, 6u01:B
14 6vvh:BBB 313 294 0.3029 0.2971 0.3163 3.61e-42 4dpq:A, 4dpq:B, 7mds:A, 7mds:B, 6vvh:AAA, 6vvh:CCC, 6vvh:DDD
15 4hnn:F 320 284 0.2801 0.2687 0.3028 2.26e-37 4hnn:A, 4hnn:B, 4hnn:C, 4hnn:D, 4hnn:E, 4hnn:G, 4hnn:H
16 5ui3:C 306 282 0.2606 0.2614 0.2837 3.63e-33 5ui3:D, 5ui3:A, 5ui3:B
17 4woq:C 290 280 0.2508 0.2655 0.2750 4.90e-26 4woq:D, 4woq:E, 4woq:F, 4woq:H, 4woz:B, 4woz:F
18 3nev:A 298 247 0.2345 0.2416 0.2915 6.95e-26 3nev:B, 3nev:C, 3nev:D, 4oe7:A, 4oe7:B, 4oe7:C, 4oe7:D, 4onv:A, 4onv:B, 4onv:C, 4onv:D, 4ptn:A, 4ptn:B, 4ptn:C, 4ptn:D, 4u4m:A, 4u4m:B, 4u4m:C, 4u4m:D
19 1f74:A 293 288 0.2573 0.2696 0.2743 3.40e-25 1f73:A, 1f73:B, 1f73:C, 1f73:D, 1f74:C, 1f7b:A, 1f7b:C
20 2wpb:A 302 274 0.2280 0.2318 0.2555 8.54e-25 4bwl:A, 4bwl:B, 4bwl:C, 4bwl:D, 1fdy:A, 1fdy:B, 1fdy:C, 1fdy:D, 1fdz:A, 1fdz:B, 1fdz:C, 1fdz:D, 1hl2:A, 1hl2:B, 1hl2:C, 1hl2:D, 3lbc:D, 3lcw:A, 3lcw:B, 3lcw:C, 3lcw:D, 4uui:A, 4uui:B, 4uui:C, 4uui:D, 2wkj:C, 2wkj:D, 2wpb:B, 2wpb:C, 2wpb:D, 2xfw:A, 2xfw:B, 2xfw:C, 2xfw:D
21 3na8:A 291 268 0.2443 0.2577 0.2799 6.06e-24 3na8:B, 3na8:C, 3na8:D
22 4img:A 293 270 0.2378 0.2491 0.2704 9.42e-24 4imf:A, 4imf:B, 4img:B
23 8u8w:A 297 275 0.2410 0.2492 0.2691 1.15e-23
24 5c55:A 307 303 0.2736 0.2736 0.2772 3.47e-22 5c55:B
25 5kzd:A 284 285 0.2508 0.2711 0.2702 1.39e-20 5kzd:B, 5kzd:C, 5kzd:D
26 6rb7:A 305 291 0.2476 0.2492 0.2612 4.60e-19 6rb7:B, 6rb7:E, 6rb7:F, 6rd1:A, 6rd1:B
27 2nuy:A 288 281 0.2248 0.2396 0.2456 1.37e-16 2nuy:B
28 6g3z:A 293 285 0.2248 0.2355 0.2421 7.34e-16 6g3z:B, 6gt8:A, 6gt8:B, 6gv2:A, 6gv2:B, 6h2s:A, 6h2s:B, 6h2s:C, 6h2s:D, 6h7s:A, 6h7s:B, 1w3i:A, 1w3i:B, 1w3i:C, 1w3i:D, 1w3n:A, 1w3n:B, 1w3n:C, 1w3n:D, 1w3t:A, 1w3t:B, 1w3t:C, 1w3t:D
29 5hwn:B 310 283 0.2345 0.2323 0.2544 7.57e-16 5hwm:A, 5hwm:B, 5hwm:C, 5hwm:D, 5hwn:A, 5hwn:C, 5hwn:D, 4ur8:A, 4ur8:B, 4ur8:C, 4ur8:D
30 3qfe:A 305 209 0.1759 0.1770 0.2584 9.91e-16
31 2hmc:A 314 207 0.1857 0.1815 0.2754 2.67e-15
32 2r94:A 286 277 0.2248 0.2413 0.2491 6.51e-13 2r94:D, 2r94:B, 2r94:C
33 8do5:B 324 126 0.1173 0.1111 0.2857 2.06e-09 8do5:A
34 1npd:B 288 110 0.0879 0.0938 0.2455 2.0 1npd:A, 1o9b:A, 1o9b:B, 3t4e:A, 3t4e:B, 1vi2:A, 1vi2:B
35 3uz5:A 247 62 0.0684 0.0850 0.3387 2.2 3uz5:B, 3uzj:A, 3uzj:B
36 1tyg:A 242 55 0.0554 0.0702 0.3091 2.9 1tyg:C
37 8g6p:A 508 46 0.0456 0.0276 0.3043 4.8
38 5iy6:I 125 35 0.0358 0.0880 0.3143 5.1 8a3y:I, 8a40:I, 7b0y:I, 8b3d:I, 8b3f:I, 7b7u:I, 8bvw:I, 8byq:I, 8bz1:I, 6drd:I, 7edx:w, 7eg7:w, 7eg8:w, 7eg9:w, 7ega:w, 7egb:w, 7egc:w, 7ena:PI, 7enc:PI, 6exv:I, 7f4g:I, 5flm:I, 6gmh:I, 6gml:I, 8gxq:PI, 8gxs:PI, 5iy7:I, 5iy8:I, 5iy9:I, 5iya:I, 5iyb:I, 5iyc:I, 5iyd:I, 7lbm:I, 7nvr:I, 7nvs:I, 7nvt:I, 7nvu:I, 7nvy:I, 7nvz:I, 7nw0:I, 8oeu:I, 8oev:I, 8oew:I, 8of0:I, 5oik:I, 7okx:I, 7oky:I, 7ol0:I, 7oo3:I, 7oob:I, 7oop:I, 7opc:I, 7opd:I, 7ozn:I, 7ozn:U, 7ozo:I, 7ozo:U, 7ozp:I, 7ozp:U, 8p4a:I, 8p4b:I, 8p4e:I, 8p4f:I, 7pks:I, 8rbx:I, 8s51:I, 8s52:I, 8s54:I, 8s55:I, 8s5n:I, 6ted:I, 8uha:I, 8uhd:I, 8uhg:I, 8ui0:I, 8uis:I, 7unc:I, 7und:I, 8w8e:I, 8w8f:I, 8wak:w, 8wal:w, 8wan:w, 8wao:w, 8wap:w, 8waq:w, 8war:w, 8was:w, 8wat:w, 8wau:w, 8wav:w, 8waw:w, 8wax:w, 8way:w, 8waz:w, 8wb0:w, 6xre:I, 7ycx:7, 7zwd:I, 7zx7:I, 7zx8:I
39 8agc:A 697 98 0.1140 0.0502 0.3571 5.1
40 6ezn:F 650 98 0.1140 0.0538 0.3571 5.3 8agb:A, 8age:A, 6c26:A, 7oci:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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