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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SYNGIGLKSAKGSSTSGHVQRSLASNNRRRPQGSQQQRQQRQNAIKKASLAVQKQIETHMEKREIEVQVSELRDRLEEEE
TLSEEQIDKKCEALRAKLTNEWQEQQRM

The query sequence (length=108) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mps:R 108 108 1.0000 1.0000 1.0000 2.71e-74 5lj3:R, 5lj5:R, 5mq0:R
2 6bk8:K 82 107 0.7593 1.0000 0.7664 1.13e-47 7b9v:R, 6exn:R
3 8c6j:R 76 23 0.1296 0.1842 0.6087 4.69e-05 8ch6:q, 9fmd:SR, 8i0r:U, 8i0s:U, 8i0t:U, 8i0u:U, 8i0v:U, 8i0w:U, 7qtt:q, 7w59:U, 7w5a:U, 7w5b:U
4 6ff4:S 34 29 0.1481 0.4706 0.5517 7.07e-04 6ff7:S, 5mqf:S, 6zym:S
5 5m8e:A 323 48 0.1204 0.0402 0.2708 2.8 5m8e:B
6 1td2:A 287 74 0.1759 0.0662 0.2568 4.0 1td2:B
7 8eno:C 407 20 0.0926 0.0246 0.5000 5.9 1l5h:A
8 4nw5:A 302 38 0.1296 0.0464 0.3684 6.4 5d9k:A, 5d9k:B, 5d9l:A, 4el9:A, 8eq5:A, 4gue:A, 4nus:A, 4nw6:A, 7opo:A, 7opo:C, 7opo:E, 7opo:G, 7opo:I, 7opo:K, 3ubd:A, 8xfy:A, 8xfy:G, 8xfy:H
9 8enl:C 382 20 0.0926 0.0262 0.5000 6.4
10 3gxa:C 244 37 0.1019 0.0451 0.2973 8.9 6dzx:A, 6dzx:B, 6dzx:C, 6dzx:D, 6dzx:E, 6dzx:F, 3gxa:A, 3gxa:B, 3gxa:D, 3gxa:E, 3gxa:F, 3ir1:A, 3ir1:B, 3ir1:C, 3ir1:D, 3ir1:E, 3ir1:F, 6oja:A, 6oja:B, 6oja:C, 6oja:D, 6oja:E, 6oja:F
11 4xpi:A 479 20 0.0926 0.0209 0.5000 9.0 2afh:A, 2afh:C, 2afi:A, 2afi:C, 2afi:I, 2afi:K, 6bbl:A, 6bbl:C, 8bts:A, 8bts:C, 8bts:H, 8bts:J, 5bvg:A, 5bvg:C, 5bvh:A, 5bvh:C, 6cdk:A, 6cdk:C, 8crs:A, 8crs:C, 5cx1:A, 5cx1:C, 5cx1:E, 5cx1:G, 5cx1:I, 5cx1:K, 5cx1:M, 5cx1:O, 8dbx:A, 8dbx:C, 8dby:A, 8dby:C, 8dfc:A, 8dfc:C, 8dfd:A, 8dfd:C, 8dpn:A, 8dpn:C, 8e3t:A, 8e3t:C, 8e3u:A, 8e3u:C, 8e3v:A, 8e3v:C, 8enl:A, 8enm:A, 8enm:C, 8enn:A, 8enn:C, 8eno:A, 1fp4:A, 1fp4:C, 1g20:A, 1g20:C, 1g21:A, 1g21:C, 7jrf:A, 7jrf:C, 3k1a:A, 3k1a:C, 1m1n:A, 1m1n:C, 1m1n:E, 1m1n:G, 1m1y:A, 1m1y:C, 1m1y:I, 1m1y:K, 1m34:A, 1m34:C, 1m34:I, 1m34:K, 7mci:A, 7mci:C, 2min:A, 2min:C, 3min:A, 3min:C, 1n2c:A, 1n2c:C, 4nd8:A, 4nd8:C, 6o7l:A, 6o7l:C, 6o7m:A, 6o7m:C, 6o7n:A, 6o7n:C, 6o7o:A, 6o7o:C, 6o7p:A, 6o7p:C, 6o7q:A, 6o7q:C, 6o7r:A, 6o7r:C, 6o7s:A, 6o7s:C, 6op1:A, 6op1:C, 6op2:A, 6op2:C, 6op3:A, 6op3:C, 6op4:A, 6op4:C, 8p8g:A, 8p8g:C, 4tku:A, 4tku:C, 4tkv:A, 4tkv:C, 3u7q:A, 3u7q:C, 6ug0:A, 6ug0:C, 7ut6:A, 7ut6:C, 7ut7:A, 7ut7:C, 7ut8:A, 7ut8:C, 7ut9:A, 7ut9:C, 7uta:A, 7uta:C, 5vq4:A, 5vq4:C, 6vxt:A, 6vxt:C, 4wna:A, 4wna:C, 4wza:A, 4wza:C, 4wzb:A, 4wzb:C, 4xpi:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218