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BioLiP
>protein
SYNGIGLKSAKGSSTSGHVQRSLASNNRRRPQGSQQQRQQRQNAIKKASIETHMEKREIEVQVSELRDRLEEEETLSEEQ
IDKKCEALRAKLTNEWQ

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5mps:R 108 103 1.0000 0.8981 0.9417 5.91e-64 5lj3:R, 5lj5:R, 5mq0:R
2 6bk8:K 82 97 0.7629 0.9024 0.7629 2.25e-41 7b9v:R, 6exn:R
3 8c6j:R 76 23 0.1443 0.1842 0.6087 5.63e-05 8ch6:q, 9fmd:SR, 8i0r:U, 8i0s:U, 8i0t:U, 8i0u:U, 8i0v:U, 8i0w:U, 7qtt:q, 7w59:U, 7w5a:U, 7w5b:U
4 6ff4:S 34 23 0.1443 0.4118 0.6087 8.37e-05 6ff7:S, 5mqf:S, 6zym:S
5 5m8e:A 323 58 0.1443 0.0433 0.2414 0.27 5m8e:B
6 3j1f:A 505 82 0.2062 0.0396 0.2439 2.3 3j1f:B, 3j1f:C, 3j1f:D, 3j1f:E, 3j1f:F, 3j1f:G, 3j1f:H, 3j1f:I, 3j1f:K, 3j1f:L, 3j1f:M, 3j1f:N, 3j1f:O, 3j1f:P, 3j1f:Q, 3j1f:R, 3j1f:S, 3ko1:A, 3ko1:B, 3ko1:C, 3ko1:D, 3ko1:E, 3ko1:F, 3ko1:G, 3ko1:H, 3ko1:I
7 8eno:C 407 20 0.1031 0.0246 0.5000 5.0 1l5h:A
8 8enl:C 382 20 0.1031 0.0262 0.5000 5.4
9 8uwb:C 309 42 0.1237 0.0388 0.2857 5.7 7cun:Q, 3dw8:C, 3dw8:F, 3fga:C, 4i5l:F, 4i5l:C, 4i5n:F, 4i5n:C, 2iae:C, 2iae:F, 2ie3:C, 2ie4:C, 7k36:C, 3k7v:C, 3k7w:C, 4lac:C, 2npp:C, 2npp:F, 6nts:C, 2nyl:C, 2nyl:F, 2nym:C, 2nym:F, 3p71:C, 7pks:q, 8rbx:q, 8rbz:q, 8rc4:q, 8so0:C, 8ttb:C, 8twi:C, 8u1x:C, 8u89:C, 8uwb:F, 5w0w:F, 7ycx:Q
10 3kxw:A 572 25 0.1134 0.0192 0.4400 7.6 3lnv:A
11 4xpi:A 479 20 0.1031 0.0209 0.5000 7.7 2afh:A, 2afh:C, 2afi:A, 2afi:C, 2afi:I, 2afi:K, 6bbl:A, 6bbl:C, 8bts:A, 8bts:C, 8bts:H, 8bts:J, 5bvg:A, 5bvg:C, 5bvh:A, 5bvh:C, 6cdk:A, 6cdk:C, 8crs:A, 8crs:C, 5cx1:A, 5cx1:C, 5cx1:E, 5cx1:G, 5cx1:I, 5cx1:K, 5cx1:M, 5cx1:O, 8dbx:A, 8dbx:C, 8dby:A, 8dby:C, 8dfc:A, 8dfc:C, 8dfd:A, 8dfd:C, 8dpn:A, 8dpn:C, 8e3t:A, 8e3t:C, 8e3u:A, 8e3u:C, 8e3v:A, 8e3v:C, 8enl:A, 8enm:A, 8enm:C, 8enn:A, 8enn:C, 8eno:A, 1fp4:A, 1fp4:C, 1g20:A, 1g20:C, 1g21:A, 1g21:C, 7jrf:A, 7jrf:C, 3k1a:A, 3k1a:C, 1m1n:A, 1m1n:C, 1m1n:E, 1m1n:G, 1m1y:A, 1m1y:C, 1m1y:I, 1m1y:K, 1m34:A, 1m34:C, 1m34:I, 1m34:K, 7mci:A, 7mci:C, 2min:A, 2min:C, 3min:A, 3min:C, 1n2c:A, 1n2c:C, 4nd8:A, 4nd8:C, 6o7l:A, 6o7l:C, 6o7m:A, 6o7m:C, 6o7n:A, 6o7n:C, 6o7o:A, 6o7o:C, 6o7p:A, 6o7p:C, 6o7q:A, 6o7q:C, 6o7r:A, 6o7r:C, 6o7s:A, 6o7s:C, 6op1:A, 6op1:C, 6op2:A, 6op2:C, 6op3:A, 6op3:C, 6op4:A, 6op4:C, 8p8g:A, 8p8g:C, 4tku:A, 4tku:C, 4tkv:A, 4tkv:C, 3u7q:A, 3u7q:C, 6ug0:A, 6ug0:C, 7ut6:A, 7ut6:C, 7ut7:A, 7ut7:C, 7ut8:A, 7ut8:C, 7ut9:A, 7ut9:C, 7uta:A, 7uta:C, 5vq4:A, 5vq4:C, 6vxt:A, 6vxt:C, 4wna:A, 4wna:C, 4wza:A, 4wza:C, 4wzb:A, 4wzb:C, 4xpi:C
12 6uz8:A 734 57 0.1959 0.0259 0.3333 8.2 6uz8:D, 6uz8:C, 6uz8:B, 6uza:A, 6uza:B, 6uza:C, 6uza:D
13 7dxb:A 738 57 0.1546 0.0203 0.2632 9.4 6cud:A, 6cud:D, 6cud:B, 6cud:C, 7dxb:D, 7dxb:B, 7dxb:C, 7dxc:A, 7dxc:B, 7dxc:D, 7dxc:C, 7dxd:A, 7dxd:B, 7dxd:C, 7dxd:D, 7dxe:D, 7dxe:A, 7dxe:B, 7dxe:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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