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BioLiP
>protein
SYEYYLDYLDLIPVDEKKLKAHKHSIVIAFWVSLAAFVVLLFLILLYMSWS

The query sequence (length=51) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8gy7:P 51 51 1.0000 1.0000 1.0000 4.74e-30
2 7kgg:C 1020 24 0.2157 0.0108 0.4583 1.9 7kgh:C, 7kgi:A, 7kgi:C
3 3ik7:A 221 34 0.2353 0.0543 0.3529 7.5 1gul:A, 1gul:B, 1gul:C, 1gul:D, 1gul:E, 1gul:F, 1gul:G, 1gul:H, 3ik7:B, 3ik7:C, 3ik7:D
4 5glt:A 278 39 0.2157 0.0396 0.2821 8.4 5glt:B, 5glu:A, 5glu:B, 5glw:A, 5glz:A, 5glz:B, 5glz:C, 5gm0:A, 5gm0:B
5 3c3d:A 306 15 0.1569 0.0261 0.5333 9.0 3c3d:B, 3c3d:C, 3c3d:D, 3c3e:A, 3c3e:B, 3c3e:C, 3c3e:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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