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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SYDKVSQAKSIIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVGAAAVAII
L

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4lck:A 81 81 1.0000 1.0000 1.0000 1.70e-50 4lck:D, 4tzp:A, 4tzp:D, 4tzv:A, 4tzw:A, 4tzz:A, 4tzz:D, 4tzz:G, 4tzz:J, 3v7e:A, 3v7e:B
2 6tmf:b 123 68 0.3951 0.2602 0.4706 8.87e-12
3 6k0a:I 116 79 0.3951 0.2759 0.4051 5.34e-11 6k0a:J, 6k0b:I, 6k0b:J, 1sds:A, 1sds:C, 1sds:B
4 3cc2:F 119 67 0.3333 0.2269 0.4030 9.02e-11 3cc4:F, 3cc7:F, 3cce:F, 3ccj:F, 3ccl:F, 3ccm:F, 3ccq:F, 3ccr:F, 3ccs:F, 3ccu:F, 3ccv:F, 3cd6:F, 3cma:F, 3cme:F, 3cpw:F, 3cxc:F, 3g4s:F, 3g6e:F, 3g71:F, 3i55:F, 3i56:F, 1jj2:F, 1k73:H, 1k8a:H, 1k9m:H, 1kc8:H, 1kd1:H, 1kqs:F, 1m1k:H, 1m90:H, 1n8r:H, 1nji:H, 2otj:F, 2otl:F, 3ow2:F, 1q7y:H, 1q81:H, 1q82:H, 1q86:H, 2qa4:F, 2qex:F, 1qvf:F, 1qvg:F, 1s72:F, 4v9f:F, 1vq4:F, 1vq5:F, 1vq6:F, 1vq7:F, 1vq8:F, 1vq9:F, 1vqk:F, 1vql:F, 1vqm:F, 1vqn:F, 1vqo:F, 1vqp:F, 1w2b:F, 1yhq:F, 1yi2:F, 1yij:F, 1yit:F, 1yj9:F, 1yjn:F, 1yjw:F
5 6q8u:C 122 79 0.3704 0.2459 0.3797 3.09e-10 4bw0:B, 4c4w:C, 4c4w:G, 5fj4:C, 5fj4:G, 5g4u:C, 5g4u:D, 5g4u:G, 5g4u:H, 5g4u:K, 5g4u:L, 5g4v:C, 5g4v:D, 5g4v:G, 5g4v:H, 6hct:C, 6hct:D, 6hct:G, 6q8u:D, 1rlg:A, 1rlg:B
6 8hku:L7A1 123 68 0.3457 0.2276 0.4118 1.04e-09 8hku:L7A2, 8hkv:L7A1, 8hkv:L7A2, 8hkx:SL7A, 8hky:L7A1, 8hky:L7A2, 8hky:SL7A, 8hkz:L7A1, 8hkz:L7A2, 8hkz:SL7A, 8hl1:SL7A, 8hl1:L7A1, 8hl1:L7A2, 8hl2:L7A1, 8hl2:L7A2, 8hl2:SL7A, 8hl3:L7A1, 8hl3:L7A2, 8hl3:SL7A, 8hl4:L7A1, 8hl4:L7A2, 8hl4:SL7A, 8hl5:L7A1, 8hl5:L7A2, 8hl5:SL7A, 8wkp:SL7A, 8wq2:SL7A, 8wq4:SL7A
7 5gin:C 122 78 0.3457 0.2295 0.3590 6.09e-09 5gin:D, 5gin:L, 5gio:C, 5gio:D, 5gio:L, 5gip:C, 5gip:D, 5gip:M, 5gip:N, 3id5:C, 3id5:G, 5jpq:U, 5jpq:V, 3pla:C, 3pla:D, 3pla:L
8 5y7m:A 125 68 0.3951 0.2560 0.4706 2.91e-06 4by9:G, 4by9:J, 4by9:D, 4by9:M, 5dcv:A, 5dcv:C, 3hax:D, 3hay:D, 3hjw:C, 2hvy:D, 5jb3:3, 5jbh:3, 3lwo:C, 3lwp:C, 3lwq:C, 3lwr:C, 3lwv:C, 3nmu:G, 3nmu:C, 3nvi:B, 3nvi:D, 3nvk:E, 3nvk:H, 7ozq:B, 7ozq:D, 7ozq:C, 7ozq:A, 6skf:BH, 6skf:BI, 6skg:BH, 6skg:BI, 6sw9:3, 6swc:3, 6swe:3, 6th6:BH, 6th6:BI, 6tph:A, 4v4n:B3, 4v4n:AG, 4v6u:A3, 4v6u:BG, 4v6u:B4, 5xtm:A, 5xtm:C, 5y7m:C, 7zag:3, 7zah:3, 7zai:3, 7zhg:3
9 3siv:A 128 63 0.2593 0.1641 0.3333 5.30e-06 6ah0:M, 6ahd:M, 1e7k:A, 1e7k:B, 8h6e:4E, 8h6j:4E, 8h6k:4E, 8h6l:4E, 7mq8:SE, 7mq8:SF, 7mq9:SE, 7mq9:SF, 7mqa:SE, 7mqa:SF, 5o9z:O, 2ozb:A, 2ozb:D, 8q7n:M, 8qo9:M, 8qoz:M, 8qpa:M, 8qpb:M, 8qpe:M, 6qw6:4D, 6qx9:4D, 8qxd:M, 8qzs:M, 8r08:M, 8r09:M, 8r0a:M, 8r0b:M, 8rm5:M, 3siu:A, 3siu:D, 3siv:D, 3siv:J, 3siv:G, 8y6o:O
10 2ale:A 132 58 0.2346 0.1439 0.3276 2.93e-05 7ajt:CF, 7ajt:CG, 7aju:CF, 7aju:CG, 7d4i:3G, 7d4i:3H, 7d5s:3G, 7d5s:3H, 7d5t:3G, 7d5t:3H, 7d63:3G, 7d63:3H, 5gan:K, 5gap:K, 3jcm:M, 6ke6:3G, 6ke6:3H, 6lqp:3G, 6lqp:3H, 6lqq:3G, 6lqq:3H, 6lqr:3G, 6lqr:3H, 6lqs:3G, 6lqs:3H, 6lqt:3G, 6lqt:3H, 6lqu:3G, 6lqu:3H, 6lqv:3G, 6lqv:3H, 6nd4:e, 6nd4:f, 5nrl:K, 4nut:A, 7suk:SE, 7suk:SF, 5tzs:f, 5wlc:SE, 5wlc:SF, 5wyj:3G, 5wyj:3H, 5wyk:3G, 5wyk:3H, 6zqa:CF, 6zqb:CF, 6zqb:CG, 6zqc:CF, 6zqc:CG, 6zqd:CF, 6zqd:CG, 6zqe:CF, 6zqe:CG, 5zwm:M, 5zwo:M
11 5oql:V 121 77 0.2469 0.1653 0.2597 8.35e-05 5oql:W, 6rxt:CE, 6rxt:CF, 6rxu:CE, 6rxu:CF, 6rxv:CE, 6rxv:CF, 6rxx:CE, 6rxx:CF, 6rxy:CE, 6rxy:CF, 6rxz:CE, 6rxz:CF
12 8hku:L30E 94 75 0.2593 0.2234 0.2800 0.001 8hkv:L30E, 8hky:L30E, 8hkz:L30E, 8hl1:L30E, 8hl2:L30E, 8hl3:L30E, 8hl4:L30E, 8hl5:L30E
13 6skf:Bb 96 78 0.2840 0.2396 0.2949 0.001 6skg:Bb, 6th6:Bb
14 9bh5:Cc 96 66 0.2469 0.2083 0.3030 0.002 9cai:Cc
15 4v8p:AG 96 69 0.2593 0.2188 0.3043 0.002 4v8p:DG, 4v8p:FG, 4v8p:HG
16 8etc:c 97 69 0.2840 0.2371 0.3333 0.002 8esq:c, 8esr:c, 8eug:c, 8eui:c
17 5t5h:g 66 28 0.1605 0.1970 0.4643 0.002
18 4v8m:Bg 96 69 0.2222 0.1875 0.2609 0.004 8ova:Bg, 8ove:Bg
19 7qep:C2 118 71 0.2716 0.1864 0.3099 0.005
20 8i9x:Lc 98 75 0.2593 0.2143 0.2800 0.008 8i9y:Lc, 8i9z:Lc, 8ia0:Lc, 7olc:Lc, 7old:Lc, 8oo0:Lc, 8pv1:Lc, 8pv2:Lc, 8pv3:Lc, 8pv4:Lc, 8pv5:Lc, 8pv6:Lc, 8pv7:Lc, 8pv8:Lc, 8pvk:Lc, 8pvl:Lc, 7r81:e1, 7z3n:Lc, 7z3o:Lc
21 8rxh:LG 241 61 0.1975 0.0664 0.2623 0.014 8a3w:G, 8a98:G, 6az3:G, 3jcs:G, 8ovj:G, 8rxx:LG, 5t2a:v
22 4v5z:B6 113 77 0.2593 0.1858 0.2727 0.030 7a01:13, 8a3d:W, 5aj0:Ac, 8b5l:c, 8b6c:c, 9bdl:AL30, 9bdn:AL30, 9bdp:AL30, 7bhp:Lc, 8bhf:P1, 8bpo:b2, 8btk:Bc, 7cpu:Lc, 7cpv:Lc, 4d5y:c, 4d67:c, 6d90:c, 6d9j:c, 9f1b:Bc, 9f1c:Bc, 9f1d:Bc, 7f5s:Lc, 8fky:LO, 8fkz:LO, 8fl2:LO, 8fl3:LO, 8fl4:LO, 8fl6:LO, 8fl7:LO, 8fl9:LO, 8fla:LO, 8flb:LO, 8flc:LO, 8fld:LO, 8fle:LO, 8flf:LO, 6frk:c, 6ftg:c, 6fti:c, 6ftj:c, 8g5y:Lc, 8g5z:Lc, 8g60:Lc, 8g61:Lc, 8g6j:Lc, 8glp:Lc, 6gz3:Ac, 6gz4:Ac, 6gz5:Ac, 6hcf:c3, 6hcj:c3, 6hcm:c3, 6hcq:c3, 8idt:E, 8idy:E, 8ie3:E, 8ifd:2W, 8ife:2W, 8ine:E, 8inf:E, 8ink:E, 6ip5:2W, 6ip6:2W, 6ip8:2W, 8ipd:E, 8ipx:E, 8ipy:E, 8ir1:E, 8ir3:E, 3j7o:c, 3j7p:c, 3j7q:c, 3j7r:c, 3j92:c, 3jag:c, 3jah:c, 3jai:c, 3jaj:c, 3jan:c, 8jdj:h, 8jdk:h, 8jdl:h, 8jdm:h, 8k2c:Lc, 5lks:Lc, 6lqm:E, 6lsr:E, 6lss:E, 7ls1:W2, 7ls2:W2, 6lu8:E, 5lzs:c, 5lzt:c, 5lzu:c, 5lzv:c, 5lzw:c, 5lzx:c, 5lzy:c, 5lzz:c, 7mdz:c, 6mtb:c, 6mtc:c, 6mtd:c, 6mte:c, 7nfx:c, 7nwg:c3, 7nwh:c, 7nwi:c, 7o7y:Bc, 7o7z:Bc, 7o80:Bc, 7o81:Bc, 7obr:c, 8ohd:Lc, 8oj0:Lc, 8oj5:Lc, 8oj8:Lc, 6ole:d, 6olf:d, 6olg:Ac, 6oli:d, 6olz:Ac, 6om0:d, 6om7:d, 7ow7:W, 7oya:c1, 7oyb:c1, 7oyc:c1, 7oyd:c, 8p2k:Bc, 6p5i:Ac, 6p5j:Ac, 6p5k:Ac, 6p5n:Ac, 8q7z:Bc, 8q87:Bc, 8qfd:c, 7qgg:d, 8qoi:Lc, 7qvp:Lc, 7qvp:Mc, 7qwq:c, 7qwr:c, 7qws:c, 6qzp:Lc, 6r5q:c, 6r6g:c, 6r6p:c, 6r7q:c, 8rjb:c, 8rjc:c, 8rjd:c, 8scb:c, 6sgc:c2, 6swa:a, 5t2c:W, 6t59:c3, 7tm3:c, 7toq:AL30, 7tor:AL30, 7tut:c, 7ucj:c, 7uck:c, 4ug0:Lc, 4ujc:Bc, 4ujd:Ac, 4uje:Cc, 4v6x:Cc, 6w6l:d, 6xa1:Lc, 7xnx:Lc, 7xny:Lc, 8xsx:Lc, 8xsy:Lc, 8xsz:Lc, 6y0g:Lc, 8y0w:Lc, 8y0x:Lc, 6y2l:Lc, 6y57:Lc, 6y6x:Lc, 8yoo:Lc, 8yop:Lc, 6z6l:Lc, 6z6m:Lc, 6z6n:Lc, 7zjw:Lf, 7zjx:Lf, 6zm7:Lc, 6zme:Lc, 6zmi:Lc, 6zmo:Lc, 6zvk:13
23 8rxh:Ld 97 69 0.2099 0.1753 0.2464 0.038 8a3w:d, 8a98:d, 6az3:d, 8ovj:d, 8rxx:Ld, 5t2a:e
24 6rm3:SM0 119 58 0.1852 0.1261 0.2586 0.048
25 4v7e:BM 123 68 0.2222 0.1463 0.2647 0.12 8r57:M
26 4v4n:AZ 99 78 0.2469 0.2020 0.2564 0.22 4v6u:BZ
27 3jcs:d 75 28 0.1111 0.1200 0.3214 0.25
28 8p5d:SM0 113 69 0.2222 0.1593 0.2609 0.86 8p60:SM0, 8p60:RM0, 7qca:SM0
29 4v6w:CG 241 54 0.1852 0.0622 0.2778 3.9 6xu6:CG, 6xu7:CG, 6xu8:CG
30 1jba:A 189 27 0.1481 0.0635 0.4444 5.9
31 3n9s:A 307 32 0.1728 0.0456 0.4375 6.4 3c4u:A, 3c4u:B, 3c52:A, 3c52:B, 3c56:A, 3c56:B, 3n9r:A, 3n9r:B, 3n9r:K, 3n9r:P, 3n9r:U, 3n9r:Z, 3n9r:e, 3n9r:j, 3n9s:B, 5uck:A, 5uck:B, 5ucn:A, 5ucn:B, 5ucp:A, 5ucp:B, 5ucs:A, 5ucs:B, 5ucz:A, 5ucz:B, 5ud0:B, 5ud2:A, 5ud2:B, 5ud3:A, 5ud3:B, 5ud4:A, 5ud4:B, 5vjf:A, 5vjf:B
32 7b04:B 1120 24 0.1358 0.0098 0.4583 7.6 7b04:E, 7b04:H, 7b04:K, 7b04:N, 7b04:Q, 7b04:T, 7b04:W
33 3e1y:A 380 68 0.2346 0.0500 0.2794 8.1 3e1y:B, 6xa1:j
34 8pxc:A 252 26 0.1481 0.0476 0.4615 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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