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BioLiP
>protein
SYAFFVQTCREEHKKKSVNFSEFSKKCSERWKKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6cij:N 133 109 1.0000 0.5639 0.6881 1.61e-43 5zdz:N, 5ze1:N, 5ze2:N
2 6cik:N 90 73 0.8800 0.7333 0.9041 1.14e-40 6cg0:N, 6cim:N
3 5ze0:N 118 99 0.9067 0.5763 0.6869 1.08e-36 1ckt:A
4 2gzk:A 159 75 0.6400 0.3019 0.6400 2.04e-27 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
5 2gzk:A 159 38 0.1733 0.0818 0.3421 0.026 9bvd:C, 9bvd:F, 9bvd:I, 6cil:N, 6edb:B, 1hry:A, 1hrz:A, 1j46:A, 1j47:A, 6oem:N, 6oem:H, 6oen:N, 6oen:H, 6oeo:N, 6oer:H
6 4qr9:A 75 36 0.4267 0.4267 0.8889 7.97e-15 4qr9:B
7 1e7j:A 74 38 0.2400 0.2432 0.4737 2.15e-07 3nm9:D, 3nm9:G, 3nm9:J, 3nm9:P, 3nm9:M, 3nm9:A, 1qrv:A, 1qrv:B, 8r1x:A
8 1j5n:A 93 38 0.2267 0.1828 0.4474 7.47e-06
9 5jh0:D 157 43 0.2267 0.1083 0.3953 9.63e-06 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
10 5jh0:D 157 57 0.2267 0.1083 0.2982 0.022 5jgh:A, 5jgh:D, 5jgh:G, 5jgh:J, 5jh0:A
11 4s2q:D 76 38 0.1733 0.1711 0.3421 0.003 4euw:A
12 7m5w:A 138 38 0.1867 0.1014 0.3684 0.004 6jrp:A, 6jrp:D, 6jrp:G, 6jrp:J
13 1gt0:D 79 38 0.1733 0.1646 0.3421 0.019 8bx1:E, 8bx2:E, 6ht5:D, 1o4x:B, 6t90:L, 6yov:L
14 6l6y:D 80 38 0.1467 0.1375 0.2895 0.024 4a3n:A, 3f27:D, 6l6y:F
15 6t78:A 77 38 0.1733 0.1688 0.3421 0.028 6t78:B, 3u2b:C
16 4y60:C 76 44 0.1867 0.1842 0.3182 0.049
17 6hb4:A 197 38 0.1200 0.0457 0.2368 0.63 6erp:C, 6erp:G, 6erq:C, 6erq:G, 6hb4:D, 6hb4:G, 6hb4:J, 6hc3:A, 6hc3:D, 6hc3:G, 6hc3:J, 7lbw:A, 7lbw:B, 7lbx:A, 7lbx:B, 4nnu:A, 4nnu:B, 4nod:A, 4nod:B, 4nod:G, 4nod:H, 3tmm:A, 3tq6:A, 3tq6:B
18 2lef:A 86 39 0.1467 0.1279 0.2821 3.9
19 6zm7:CE 124 51 0.1600 0.0968 0.2353 6.1 8k2c:CE, 8xsy:CE, 6z6l:CE, 6zme:CE
20 5ys9:A 692 13 0.0933 0.0101 0.5385 8.4 5ys9:B
21 5h6j:B 222 26 0.1333 0.0450 0.3846 9.5 5h6j:A, 5h6l:A, 5h6l:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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