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BioLiP
>protein
SWKVCPMCSEQFPPDYDQQVFERHVQTHFDQNVLN

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2m7q:A 69 34 0.9714 0.4928 1.0000 1.45e-20 4bmj:C, 4bmj:H, 4bmj:J, 5yt6:F, 5yt6:B, 5yt6:H
2 4z4k:A 282 28 0.8000 0.0993 1.0000 8.20e-16 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
3 4z4k:A 282 26 0.4286 0.0532 0.5769 4.61e-06 5aas:A, 4bmj:A, 4bmj:B, 4bmj:D, 4bmj:E, 4bmj:F, 4bmj:G, 4bmj:I, 4bmj:K, 3vht:B, 5yt6:D, 4z4k:B, 4z4m:A, 4z4m:B
4 8pmq:9 412 30 0.3429 0.0291 0.4000 0.033
5 7ns4:i 358 30 0.3429 0.0335 0.4000 0.035
6 6adi:A 418 18 0.2286 0.0191 0.4444 0.94 6adi:B, 5h3e:B, 5h3f:A, 5h3f:B, 5i95:A, 5i96:A, 5i96:B, 4ja8:A, 4ja8:B, 5svn:A, 5svn:B, 5svo:A, 5svo:B, 6vfz:A, 6vfz:B
7 5aaq:A 57 24 0.3143 0.1930 0.4583 0.96 2mxp:A, 4xkl:B, 4xkl:D
8 7olc:LL 209 23 0.2286 0.0383 0.3478 1.3 8i9p:LL, 8i9r:LL, 8i9t:LL, 8i9v:LL, 8i9w:LL, 8i9x:LL, 8i9y:LL, 8i9z:LL, 8ia0:LL, 7old:LL, 8oo0:LL, 8pv1:LL, 8pv2:LL, 8pv3:LL, 8pv4:LL, 8pv5:LL, 8pv6:LL, 8pv7:LL, 8pv8:LL, 8pvk:LL, 8pvl:LL, 7z3n:LL, 7z3o:LL
9 2muq:A 44 25 0.2286 0.1818 0.3200 1.4 2mur:A, 3wwq:C, 3wwq:F, 3wwq:I, 3wwq:L
10 7r81:N1 213 23 0.2286 0.0376 0.3478 1.5
11 7oje:A 365 25 0.2286 0.0219 0.3200 2.8 7oje:C
12 6thh:C 816 7 0.1714 0.0074 0.8571 4.4 6yes:A
13 6kr3:B 836 26 0.2571 0.0108 0.3462 4.7 5k5m:A
14 8w0b:A 667 18 0.2571 0.0135 0.5000 5.1 7kds:A, 8v4o:A, 8v4o:B, 8v4o:C, 8v4p:A, 8v4p:B, 8v4p:C, 8v4r:A, 8v4r:B, 8v4r:C, 8w0b:B, 8w0b:C, 8w0c:A, 8w0c:B, 8w0c:C, 8w0d:A, 8w0d:B, 8w0d:C, 8w0h:A, 8w0h:B, 8w0h:C, 8w0j:A, 8w0j:B, 8w0j:C, 8w0l:A, 8w0l:B, 8w0l:C, 8w0m:A, 8w0m:B, 8w0m:C
15 4krh:A 430 28 0.2571 0.0209 0.3214 6.2 4krh:B, 4kri:A, 4kri:B, 4kri:C
16 1hjs:A 332 36 0.3714 0.0392 0.3611 6.8 1hju:A, 1hju:D
17 3sxp:D 314 24 0.2000 0.0223 0.2917 7.2 3sxp:A, 3sxp:B, 3sxp:C, 3sxp:E
18 2mdg:A 55 10 0.1714 0.1091 0.6000 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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