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BioLiP
>protein
SWEPPTEAETKVLQARRERQDRISRLMGDYLLRGYRMLGETCADCGTILLQDKQRKIYCVACQEL

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hcz:A 65 65 1.0000 1.0000 1.0000 1.68e-43 6hcz:B
2 4qiw:B 1069 24 0.1846 0.0112 0.5000 0.065 4qiw:J
3 8oki:B 1101 25 0.1846 0.0109 0.4800 0.068 8cro:B, 8orq:B, 8p2i:B, 8rbo:B
4 6kf3:B 1114 24 0.1846 0.0108 0.5000 0.072 9bct:B, 9bcu:B, 6kf4:B, 6kf9:B
5 3qqc:A 381 24 0.1846 0.0315 0.5000 0.081
6 3qqc:A 381 24 0.1692 0.0289 0.4583 1.2
7 2ebq:A 47 20 0.1692 0.2340 0.5500 0.31 2gqe:A, 2k0c:A
8 7mo2:B 38 20 0.1538 0.2632 0.5000 0.32 3ch5:B, 7mo2:D
9 7elh:B 1264 35 0.1846 0.0095 0.3429 1.9 1mwh:A, 1n1h:A, 1n35:A, 1n38:A, 1uon:A, 7yed:R, 7yfe:R
10 7plo:K 639 34 0.2000 0.0203 0.3824 2.7 8b9d:K, 7pfo:K
11 4die:C 213 41 0.2154 0.0657 0.3415 2.8 4die:A, 4die:B, 4die:D
12 7kyd:A 534 23 0.1538 0.0187 0.4348 2.9
13 8oki:A 901 24 0.1692 0.0122 0.4583 3.9 8cro:A, 8orq:A, 8p2i:A, 8rbo:A
14 6ysf:E 252 29 0.1846 0.0476 0.4138 5.1 6ysf:D
15 3nd1:B 249 30 0.1846 0.0482 0.4000 5.8 3nd1:A
16 7ezt:B 727 34 0.1538 0.0138 0.2941 7.1
17 4iwh:A 358 40 0.2154 0.0391 0.3500 7.2 4iwh:B, 4xxv:A, 4xxv:B
18 1pn4:D 273 11 0.1231 0.0293 0.7273 8.2 1pn4:A, 1pn4:B
19 5zy9:C 400 25 0.1692 0.0275 0.4400 8.6 5zy9:D, 5zy9:E
20 3tkn:A 451 46 0.1538 0.0222 0.2174 8.7 3pbp:A, 3pbp:D, 3pbp:G, 3pbp:J, 3tkn:G, 3tkn:D
21 7mo1:B 34 19 0.1538 0.2941 0.5263 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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