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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
SWEKGSLVSPGGLQMLLVKEGVQNAKTDVVVNSVPLDLVLSRGPLSSSLLEKAGPELQEELDTVGQGVAVSMGTVLKTSS
WNLDCRYVLHVVAPEWRNGSTSSLKIMEDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFSFSSSNQL
STLQEVHFLLHPSDHENIQAFSDEFARRA

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3vfq:A 375 186 0.9630 0.4853 0.9785 5.71e-131 4d86:A, 5o2d:A, 3q6z:A, 3q71:A
2 3vfq:A 375 184 0.2593 0.1307 0.2663 1.46e-11 4d86:A, 5o2d:A, 3q6z:A, 3q71:A
3 5iit:C 357 184 0.2804 0.1485 0.2880 4.71e-18 3iid:A, 3iif:A, 3iif:B, 3iif:C, 5iit:B
4 7ny7:A 176 93 0.1746 0.1875 0.3548 1.26e-15
5 5cb5:R 173 169 0.2381 0.2601 0.2663 1.59e-15 5cb3:A, 5cb5:A, 5cb5:B, 5cb5:C, 5cb5:D, 5cb5:E, 5cb5:F, 5cb5:G, 5cb5:H, 5cb5:I, 5cb5:J, 5cb5:K, 5cb5:L, 5cb5:M, 5cb5:N, 5cb5:O, 5cb5:P, 5cb5:Q, 5cms:R, 5cms:A, 5cms:B, 5cms:C, 5cms:D, 5cms:E, 5cms:F, 5cms:G, 5cms:H, 5cms:I, 5cms:J, 5cms:K, 5cms:L, 5cms:M, 5cms:N, 5cms:O, 5cms:P, 5cms:Q
6 8rsj:A 262 157 0.2381 0.1718 0.2866 1.47e-12 8rsi:A, 8rsi:B, 8rsj:B, 8rsk:A, 8rsk:B, 8rsk:C
7 5lbp:A 196 120 0.1852 0.1786 0.2917 8.66e-12 5l9k:A, 5l9k:B, 5l9q:A, 5l9q:B, 5lau:A
8 4etj:A 164 126 0.2011 0.2317 0.3016 5.00e-11 4jll:A
9 8rsl:A 271 93 0.1534 0.1070 0.3118 2.23e-09 5kiv:A, 8rsl:B
10 3v2b:A 176 178 0.2434 0.2614 0.2584 5.49e-09
11 8rsm:A 254 154 0.2063 0.1535 0.2532 6.55e-09
12 6lh4:A 235 140 0.2011 0.1617 0.2714 1.88e-08 6lh4:B, 6lh4:C, 6lh4:D
13 4abk:A 182 145 0.2116 0.2198 0.2759 1.48e-07 5qht:A, 5qhu:A, 5qhv:A, 5qhw:A, 5qhx:A, 5qhy:A, 5qhz:A, 5qi0:A, 5qi1:A, 5qi2:A, 5qi3:A, 5qi4:A, 5qi5:A, 5qi6:A, 5qi7:A, 5qi8:A, 5qi9:A, 5qia:A
14 4iqy:A 221 135 0.1799 0.1538 0.2519 2.04e-07 4iqy:B
15 5fsx:A 233 145 0.2063 0.1674 0.2690 1.70e-06 5fsx:B, 5fsy:A
16 8rsn:A 538 119 0.1587 0.0558 0.2521 0.002 8rsn:B
17 6fx7:A 194 108 0.1640 0.1598 0.2870 0.005 2bfq:A, 2bfr:A, 7wr6:B
18 5m3e:A 152 131 0.1587 0.1974 0.2290 0.017
19 4gua:A 662 50 0.0688 0.0196 0.2600 0.35 4gua:B, 4gua:C
20 5lht:A 284 73 0.1376 0.0915 0.3562 3.8 5lhu:A, 1nh8:A, 5u99:A
21 3zqe:A 272 51 0.0741 0.0515 0.2745 3.9 7agx:2F, 7agx:2K
22 3wfr:H 463 54 0.0899 0.0367 0.3148 5.9 3wfq:E, 3wfq:F, 3wfq:G, 3wfq:H, 3wfr:E, 3wfr:F, 3wfr:G, 3wfs:C, 3wfs:D
23 6ylh:7 547 62 0.1005 0.0347 0.3065 6.8
24 6yle:C 545 62 0.1005 0.0349 0.3065 7.0
25 4itb:A 453 77 0.1058 0.0442 0.2597 8.3 4ita:A, 4ita:B, 4itb:B, 3vz3:A, 3vz3:B
26 1chm:A 401 82 0.1376 0.0648 0.3171 9.0 1chm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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