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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQI
YELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFSLE
ELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRVLKCY
LHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2v8q:E 304 297 1.0000 0.9309 0.9529 0.0 6b1u:E, 6b1u:F, 6b2e:C, 8bik:C, 8bik:F, 6c9f:C, 6c9g:C, 6c9h:C, 6c9j:C, 4cfe:E, 4cfe:F, 4cff:E, 4cff:F, 4cfh:E, 6e4t:C, 6e4u:C, 6e4w:C, 4eag:C, 4eai:C, 4eaj:C, 4eak:C, 4eal:C, 5ezv:E, 5ezv:F, 5iso:E, 5iso:F, 7jhg:G, 7jhh:G, 7jij:G, 5kq5:C, 7m74:G, 7myj:E, 7myj:F, 4qfg:C, 4qfr:C, 4rer:G, 4rew:G, 5t5t:C, 5ufu:C, 2uv4:A, 2uv5:A, 2uv6:A, 2uv7:A, 2v92:E, 2v9j:E, 2y8l:E, 2y8q:E, 2ya3:E, 4zhx:E, 4zhx:F
2 4qfs:C 267 281 0.9435 1.0000 0.9502 0.0
3 2oox:E 333 297 0.3640 0.3093 0.3468 9.17e-55 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E
4 3tdh:C 316 295 0.3746 0.3354 0.3593 1.80e-51 3t4n:C, 3te5:C
5 3lfz:A 280 285 0.2155 0.2179 0.2140 7.98e-08 3kh5:A
6 3lfz:A 280 198 0.1519 0.1536 0.2172 8.25e-05 3kh5:A
7 3fhm:A 136 102 0.0954 0.1985 0.2647 1.11e-06 3fhm:D, 3fhm:B, 3fhm:C
8 3kpc:A 124 120 0.1307 0.2984 0.3083 1.45e-05 3kpb:A, 3kpb:C, 3kpb:D, 3kpd:A, 3kpd:B, 3kpd:C, 3kpd:D
9 3kpc:A 124 120 0.0989 0.2258 0.2333 4.42e-05 3kpb:A, 3kpb:C, 3kpb:D, 3kpd:A, 3kpd:B, 3kpd:C, 3kpd:D
10 4gqy:A 147 129 0.1237 0.2381 0.2713 3.17e-05 4gqy:B, 4gqy:C, 4gqy:D
11 4gqy:A 147 130 0.1060 0.2041 0.2308 0.016 4gqy:B, 4gqy:C, 4gqy:D
12 8qqp:A 464 149 0.1201 0.0733 0.2282 1.52e-04 8q65:A, 8q65:E, 8qqp:B, 8qqp:C, 8qqp:D, 8qqp:E, 8qqp:F, 8qqp:G, 8qqp:H, 8qqq:A, 8qqq:B, 8qqq:C, 8qqq:D, 8qqq:E, 8qqq:F, 8qqq:G, 8qqq:H, 8qqr:A, 8qqr:B, 8qqr:C, 8qqr:D, 8qqr:E, 8qqr:F, 8qqr:G, 8qqr:H, 8qqt:A, 8qqt:B, 8qqt:C, 8qqt:D, 8qqt:E, 8qqt:F, 8qqt:G, 8qqt:H
13 8qqp:A 464 96 0.0848 0.0517 0.2500 0.077 8q65:A, 8q65:E, 8qqp:B, 8qqp:C, 8qqp:D, 8qqp:E, 8qqp:F, 8qqp:G, 8qqp:H, 8qqq:A, 8qqq:B, 8qqq:C, 8qqq:D, 8qqq:E, 8qqq:F, 8qqq:G, 8qqq:H, 8qqr:A, 8qqr:B, 8qqr:C, 8qqr:D, 8qqr:E, 8qqr:F, 8qqr:G, 8qqr:H, 8qqt:A, 8qqt:B, 8qqt:C, 8qqt:D, 8qqt:E, 8qqt:F, 8qqt:G, 8qqt:H
14 7oj1:B 425 107 0.0813 0.0541 0.2150 0.021
15 2qh1:B 185 115 0.0989 0.1514 0.2435 0.059 1pvm:A, 1pvm:B, 2qh1:A
16 2rc3:C 128 123 0.1060 0.2344 0.2439 0.060 2rc3:A, 2rc3:D, 2rc3:B
17 3ddj:A 279 116 0.1060 0.1075 0.2586 0.15
18 3ddj:A 279 180 0.1307 0.1326 0.2056 7.7
19 7cfk:B 166 104 0.0954 0.1627 0.2596 0.25 7cfi:A, 7cfk:A
20 5g5x:A 119 53 0.0530 0.1261 0.2830 0.38
21 5g5x:A 119 88 0.0919 0.2185 0.2955 2.0
22 2yvx:A 442 55 0.0707 0.0452 0.3636 0.65 8h5e:A, 4u9n:B, 4wib:B, 5x9g:A, 5x9g:B, 5x9g:C, 5x9g:D, 5x9h:A, 5x9h:B, 2yvx:B, 2yvx:C, 2yvx:D, 2yvy:A, 2zy9:A, 2zy9:B
23 2yvx:A 442 87 0.0919 0.0588 0.2989 1.8 8h5e:A, 4u9n:B, 4wib:B, 5x9g:A, 5x9g:B, 5x9g:C, 5x9g:D, 5x9h:A, 5x9h:B, 2yvx:B, 2yvx:C, 2yvx:D, 2yvy:A, 2zy9:A, 2zy9:B
24 2yzq:A 224 181 0.1449 0.1830 0.2265 1.1
25 7pji:A 445 95 0.0883 0.0562 0.2632 1.6 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
26 7jrg:A 487 81 0.0777 0.0452 0.2716 1.8 8e73:A, 8e73:M, 7jrg:M, 7jrp:A, 7jrp:M
27 3jtf:B 125 26 0.0353 0.0800 0.3846 2.1 3jtf:A
28 1zfj:A 476 107 0.0813 0.0483 0.2150 2.5
29 7qem:B 428 91 0.0883 0.0584 0.2747 2.5 7qdx:A, 7qdx:B, 7qem:A, 7qem:D
30 3pc3:A 504 107 0.0954 0.0536 0.2523 2.5 3pc2:A, 3pc4:A
31 3pc3:A 504 46 0.0353 0.0198 0.2174 3.4 3pc2:A, 3pc4:A
32 4fry:B 138 122 0.0954 0.1957 0.2213 2.7 4fry:A
33 6ie0:B 347 86 0.0919 0.0749 0.3023 2.7 6ie0:C, 6ie0:D
34 6mo0:A 164 38 0.0424 0.0732 0.3158 3.5 6mo0:B, 6mo1:A, 6mo1:B, 6mo2:A, 6mo2:B
35 4hg0:A 232 113 0.0919 0.1121 0.2301 3.6 3nqr:A, 3nqr:B, 3nqr:C, 3nqr:D, 5yz2:A, 5yz2:B
36 8gpv:A 255 211 0.1555 0.1725 0.2085 4.6
37 5ks7:A 123 37 0.0495 0.1138 0.3784 4.9 5ks7:B
38 7m1t:A 321 110 0.0883 0.0779 0.2273 6.6 7m1t:B, 7msu:A
39 7rkh:D 559 32 0.0495 0.0250 0.4375 8.8 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
40 7urg:A 401 43 0.0424 0.0299 0.2791 9.3 7urg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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