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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
SVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQI
YELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKP
EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKAL
QHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVL

The query sequence (length=298) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2v8q:E 304 298 0.9899 0.9704 0.9899 0.0 6b1u:E, 6b1u:F, 6b2e:C, 8bik:C, 8bik:F, 6c9f:C, 6c9g:C, 6c9h:C, 6c9j:C, 4cfe:E, 4cfe:F, 4cff:E, 4cff:F, 4cfh:E, 6e4t:C, 6e4u:C, 6e4w:C, 4eag:C, 4eai:C, 4eaj:C, 4eak:C, 4eal:C, 5ezv:E, 5ezv:F, 5iso:E, 5iso:F, 7jhg:G, 7jhh:G, 7jij:G, 5kq5:C, 7m74:G, 7myj:E, 7myj:F, 4qfg:C, 4qfr:C, 4rer:G, 4rew:G, 5t5t:C, 5ufu:C, 2uv4:A, 2uv5:A, 2uv6:A, 2uv7:A, 2v92:E, 2v9j:E, 2y8l:E, 2y8q:E, 2ya3:E, 4zhx:E, 4zhx:F
2 4qfs:C 267 295 0.8893 0.9925 0.8983 0.0
3 2oox:E 333 301 0.3557 0.3183 0.3522 2.21e-59 2oox:G, 2ooy:G, 2ooy:E, 2qr1:G, 2qr1:E, 2qrc:G, 2qrc:E, 2qrd:G, 2qrd:E, 2qre:G, 2qre:E
4 3tdh:C 316 302 0.3792 0.3576 0.3742 9.00e-59 3t4n:C, 3te5:C
5 3lfz:A 280 293 0.2047 0.2179 0.2082 1.60e-06 3kh5:A
6 3lfz:A 280 203 0.1510 0.1607 0.2217 5.85e-06 3kh5:A
7 3fhm:A 136 108 0.0940 0.2059 0.2593 3.22e-05 3fhm:D, 3fhm:B, 3fhm:C
8 3kpc:A 124 128 0.1275 0.3065 0.2969 5.12e-05 3kpb:A, 3kpb:C, 3kpb:D, 3kpd:A, 3kpd:B, 3kpd:C, 3kpd:D
9 3kpc:A 124 131 0.1040 0.2500 0.2366 0.007 3kpb:A, 3kpb:C, 3kpb:D, 3kpd:A, 3kpd:B, 3kpd:C, 3kpd:D
10 4gqy:A 147 129 0.1107 0.2245 0.2558 6.11e-05 4gqy:B, 4gqy:C, 4gqy:D
11 4gqy:A 147 131 0.1074 0.2177 0.2443 0.018 4gqy:B, 4gqy:C, 4gqy:D
12 8qqp:A 464 158 0.1242 0.0797 0.2342 3.51e-04 8q65:A, 8q65:E, 8qqp:B, 8qqp:C, 8qqp:D, 8qqp:E, 8qqp:F, 8qqp:G, 8qqp:H, 8qqq:A, 8qqq:B, 8qqq:C, 8qqq:D, 8qqq:E, 8qqq:F, 8qqq:G, 8qqq:H, 8qqr:A, 8qqr:B, 8qqr:C, 8qqr:D, 8qqr:E, 8qqr:F, 8qqr:G, 8qqr:H, 8qqt:A, 8qqt:B, 8qqt:C, 8qqt:D, 8qqt:E, 8qqt:F, 8qqt:G, 8qqt:H
13 3ddj:A 279 194 0.1544 0.1649 0.2371 0.005
14 3ddj:A 279 120 0.0973 0.1039 0.2417 3.5
15 2rc3:C 128 129 0.1074 0.2500 0.2481 0.066 2rc3:A, 2rc3:D, 2rc3:B
16 7cfk:B 166 147 0.1107 0.1988 0.2245 0.22 7cfi:A, 7cfk:A
17 6zza:A 150 95 0.0839 0.1667 0.2632 0.32
18 5g5x:A 119 53 0.0503 0.1261 0.2830 0.42
19 2yvx:A 442 55 0.0671 0.0452 0.3636 0.58 8h5e:A, 4u9n:B, 4wib:B, 5x9g:A, 5x9g:B, 5x9g:C, 5x9g:D, 5x9h:A, 5x9h:B, 2yvx:B, 2yvx:C, 2yvx:D, 2yvy:A, 2zy9:A, 2zy9:B
20 7oj1:B 425 115 0.0940 0.0659 0.2435 1.0
21 7jrg:A 487 89 0.0772 0.0472 0.2584 1.5 8e73:A, 8e73:M, 7jrg:M, 7jrp:A, 7jrp:M
22 7pji:A 445 96 0.0839 0.0562 0.2604 2.3 4dqw:A, 4dqw:B, 6gk9:A, 6gk9:D, 7pji:B
23 7qem:B 428 37 0.0470 0.0327 0.3784 2.9 7qdx:A, 7qdx:B, 7qem:A, 7qem:D
24 3pc3:A 504 46 0.0336 0.0198 0.2174 2.9 3pc2:A, 3pc4:A
25 8gpv:A 255 216 0.1510 0.1765 0.2083 3.1
26 7zel:A 827 77 0.0638 0.0230 0.2468 3.2 7zel:B, 7zep:B, 7zes:A, 7zes:B
27 1zfj:A 476 115 0.0805 0.0504 0.2087 3.8
28 6mo0:A 164 38 0.0403 0.0732 0.3158 4.2 6mo0:B, 6mo1:A, 6mo1:B, 6mo2:A, 6mo2:B
29 6a4d:A 184 47 0.0604 0.0978 0.3830 4.3 6a4d:B, 6a4e:A, 6a4e:C, 6a4f:A, 6a4f:B
30 4fry:B 138 125 0.0940 0.2029 0.2240 4.5 4fry:A
31 4umv:A 605 80 0.0772 0.0380 0.2875 5.4 4umw:A
32 2qh1:B 185 121 0.0940 0.1514 0.2314 6.5 1pvm:A, 1pvm:B, 2qh1:A
33 7os3:AAA 369 80 0.0537 0.0434 0.2000 6.7 7os3:BBB, 7os5:AAA, 7os5:BBB, 7os6:AAA, 7os6:DDD, 7os6:BBB, 7os6:CCC, 7ou1:AAA, 7ou1:BBB, 7ou1:CCC, 7ou1:DDD, 7oz6:AAA, 7oz6:BBB, 8rue:A, 8rue:B, 8rue:C, 8rue:D, 8ruf:A, 8ruf:B, 8ruf:C, 8ruf:D
34 7z8g:A 3047 33 0.0470 0.0046 0.4242 7.8 8fdu:A, 7z8l:f
35 8ptk:f 4502 33 0.0470 0.0031 0.4242 7.9 8ptk:e
36 8dyu:A 2562 33 0.0470 0.0055 0.4242 7.9 8dyv:A
37 7z8f:e 4579 33 0.0470 0.0031 0.4242 8.1 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A
38 8fcy:A 2864 33 0.0470 0.0049 0.4242 8.3 8fd6:A, 8fdt:A
39 8pqw:A 2892 33 0.0470 0.0048 0.4242 8.3 8pqy:A, 8pqz:A, 8pqz:J
40 5nug:A 2920 33 0.0470 0.0048 0.4242 8.3 5nug:B
41 5c2v:D 770 68 0.0604 0.0234 0.2647 8.8 5c2v:A, 5c2w:A, 5c2w:D
42 7urg:A 401 43 0.0403 0.0299 0.2791 9.1 7urg:B
43 6gqd:A 344 40 0.0470 0.0407 0.3500 9.3 5in3:B, 5in3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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